org.simtk.molecularstructure.protein
Class AminoAcid

java.lang.Object
  org.simtk.molecularstructure.ResidueTypeClass
      org.simtk.molecularstructure.protein.AminoAcid

All Implemented Interfaces:

ResidueType

Direct Known Subclasses:

Alanine, Arginine, Asparagine, Aspartate, Cysteine, Glutamate, Glutamine, Glycine, Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Proline, Serine, Threonine, Tryptophan, Tyrosine, UnknownAminoAcid, Valine

public class AminoAcid
extends ResidueTypeClass

Field Summary

static FunctionalGroup	backboneGroup
static FunctionalGroup	sideChainGroup

Fields inherited from class org.simtk.molecularstructure.ResidueTypeClass

genericBonds, oneLetterCode, residueName, threeLetterCode, UNKNOWN_RESIDUE_TYPE

Constructor Summary

AminoAcid(char olc, java.lang.String tlc, java.lang.String name)

Method Summary

protected void

addGenericBonds()

Methods inherited from class org.simtk.molecularstructure.ResidueTypeClass

addGenericBond, genericBonds, getHydrogenBondAcceptorAtomNames, getHydrogenBondDonorAtomNames, getOneLetterCode, getResidueName, getThreeLetterCode, getType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

sideChainGroup

public static FunctionalGroup sideChainGroup

backboneGroup

public static FunctionalGroup backboneGroup

Constructor Detail

AminoAcid

public AminoAcid(char olc,
                 java.lang.String tlc,
                 java.lang.String name)

Method Detail

addGenericBonds

protected void addGenericBonds()

Overrides:

addGenericBonds in class ResidueTypeClass