org.simtk.pdb
Class LoadPdbUrlProcess

java.lang.Object
  java.lang.Thread
      org.simtk.pdb.LoadPdbUrlProcess

All Implemented Interfaces:

java.lang.Runnable, MonitoredProcess

public class LoadPdbUrlProcess
extends java.lang.Thread

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

protected MoleculeCollection	molecules
protected java.net.URL	url

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

protected

LoadPdbUrlProcess(java.net.URL url, SimpleObservable loadMoleculeObservable)

Method Summary

void	abort()
void	cancelLoad()
protected java.io.InputStream	getInputStream()
int	getMaximum()
int	getMinimum()
MoleculeCollection	getMolecules()
int	getProgress()
boolean	isFailed()
boolean	isSuccessful()
protected void	loadMolecules()
void	run()
void	setPdbId(java.lang.String pdbId)

Methods inherited from class java.lang.Thread

activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.simtk.gui.MonitoredProcess

isAlive

Field Detail

url

protected java.net.URL url

molecules

protected volatile MoleculeCollection molecules

Constructor Detail

LoadPdbUrlProcess

protected LoadPdbUrlProcess(java.net.URL url,
                            SimpleObservable loadMoleculeObservable)

Method Detail

getInputStream

protected java.io.InputStream getInputStream()
                                      throws java.io.IOException

Throws:

java.io.IOException

setPdbId

public void setPdbId(java.lang.String pdbId)

loadMolecules

protected void loadMolecules()
                      throws java.io.IOException,
                             java.lang.InterruptedException

Throws:

java.io.IOException

java.lang.InterruptedException

cancelLoad

public void cancelLoad()

getMolecules

public MoleculeCollection getMolecules()

run

public void run()

Specified by:

run in interface java.lang.Runnable

Overrides:

run in class java.lang.Thread

abort

public void abort()

Specified by:

abort in interface MonitoredProcess

getProgress

public int getProgress()

Specified by:

getProgress in interface MonitoredProcess

getMinimum

public int getMinimum()

Specified by:

getMinimum in interface MonitoredProcess

getMaximum

public int getMaximum()

Specified by:

getMaximum in interface MonitoredProcess

isFailed

public boolean isFailed()

Specified by:

isFailed in interface MonitoredProcess

isSuccessful

public boolean isSuccessful()

Specified by:

isSuccessful in interface MonitoredProcess