org.simtk.molecularstructure
Interfaces 
Biopolymer
Chemical
Molecular
Molecule
Residue
ResidueType
SecondaryStructure
Classes 
BiopolymerClass
FunctionalGroup
MolecularClass
MoleculeClass
MoleculeCollection
ResidueClass
ResidueTypeClass
SecondaryStructureClass
SequenceAlignment
Enums 
SecondaryStructureClass.SourceType
Exceptions 
InsufficientAtomsException