org.simtk.moleculargraphics
Class SequenceCanvas

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.simtk.moleculargraphics.BufferedCanvas
                      org.simtk.moleculargraphics.SequenceCanvas

All Implemented Interfaces:

java.awt.event.ComponentListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, java.util.Observer, javax.accessibility.Accessible

Direct Known Subclasses:

TornadoSequenceCanvas

public class SequenceCanvas
extends BufferedCanvas
implements java.util.Observer

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected java.awt.Font	font
protected java.awt.Graphics	myGraphics
protected java.awt.Font	numberFont
protected java.util.Map<java.lang.Integer,org.simtk.molecularstructure.Residue>	positionResidues
protected java.util.Map<org.simtk.molecularstructure.Residue,java.lang.Integer>	residuePositions

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SequenceCanvas()

Method Summary

int	getLeftEdgePixel()
java.awt.Dimension	getMaximumSize()
java.awt.Dimension	getMinimumSize()
org.simtk.molecularstructure.Biopolymer	getMolecule()
java.awt.Dimension	getPreferredSize()
int	getResidueWidth()
int	getRightEdgePixel()
int	getTotalSequenceWidth() Get width of entire sequence, not just the visible canvas
void	paint(java.awt.Graphics onScreenGraphics)
void	setBackground(java.awt.Color c)
void	setLeftEdgePixel(int p)
void	setMolecule(org.simtk.molecularstructure.Biopolymer molecule)
void	setParentContainer(javax.swing.JComponent parent)
void	update(java.awt.Graphics g)
void	update(java.util.Observable observable, java.lang.Object object)

Methods inherited from class org.simtk.moleculargraphics.BufferedCanvas

componentHidden, componentMoved, componentResized, componentShown

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

myGraphics

protected java.awt.Graphics myGraphics

font

protected java.awt.Font font

numberFont

protected java.awt.Font numberFont

residuePositions

protected java.util.Map<org.simtk.molecularstructure.Residue,java.lang.Integer> residuePositions

positionResidues

protected java.util.Map<java.lang.Integer,org.simtk.molecularstructure.Residue> positionResidues

Constructor Detail

SequenceCanvas

public SequenceCanvas()

Method Detail

setBackground

public void setBackground(java.awt.Color c)

Overrides:

setBackground in class javax.swing.JComponent

setParentContainer

public void setParentContainer(javax.swing.JComponent parent)

getMaximumSize

public java.awt.Dimension getMaximumSize()

Overrides:

getMaximumSize in class javax.swing.JComponent

getMinimumSize

public java.awt.Dimension getMinimumSize()

Overrides:

getMinimumSize in class javax.swing.JComponent

getPreferredSize

public java.awt.Dimension getPreferredSize()

Overrides:

getPreferredSize in class javax.swing.JComponent

update

public void update(java.awt.Graphics g)

Overrides:

update in class BufferedCanvas

paint

public void paint(java.awt.Graphics onScreenGraphics)

Overrides:

paint in class BufferedCanvas

update

public void update(java.util.Observable observable,
                   java.lang.Object object)

Specified by:

update in interface java.util.Observer

getMolecule

public org.simtk.molecularstructure.Biopolymer getMolecule()

setMolecule

public void setMolecule(org.simtk.molecularstructure.Biopolymer molecule)

getTotalSequenceWidth

public int getTotalSequenceWidth()

Get width of entire sequence, not just the visible canvas

Returns:

width of entire sequence in pixels

getResidueWidth

public int getResidueWidth()

setLeftEdgePixel

public void setLeftEdgePixel(int p)

getLeftEdgePixel

public int getLeftEdgePixel()

getRightEdgePixel

public int getRightEdgePixel()