Hierarchy For All Packages

Package Hierarchies:

org.simtk.console, org.simtk.mol.color, org.simtk.mol.toon, org.simtk.moleculargraphics, org.simtk.parser, org.simtk.splashscreen, org.simtk.toon.secstruct, org.simtk.tornado, org.simtk.tornado.command

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.simtk.tornado.command.BackgroundColorAction
  • org.simtk.moleculargraphics.ActiveMoleculeBroadcaster
  • org.simtk.mol.toon.ActorCartoonClass (implements org.simtk.mol.toon.ActorCartoon, org.simtk.moleculargraphics.ResidueHighlightListener)
    • org.simtk.mol.toon.BackboneCurveActor
    • org.simtk.mol.toon.BackboneTubeActor
    • org.simtk.mol.toon.BaseConnectorTubeActor
      • org.simtk.mol.toon.BaseStickTubeActor
    • org.simtk.mol.toon.DuplexCylinderActor
    • org.simtk.mol.toon.GlyphCartoon
      • org.simtk.mol.toon.AtomSphereActor
        • org.simtk.mol.toon.ProteinRibbonSphereTest
      • org.simtk.mol.toon.BackboneStick
      • org.simtk.mol.toon.BondStickCartoon
      • org.simtk.mol.toon.CylinderCartoon
        • org.simtk.mol.toon.BasePairRod
      • org.simtk.mol.toon.NucleotideStickCartoon
      • org.simtk.mol.toon.ResidueSphereActor
      • org.simtk.mol.toon.TensorGlyphCartoon
        • org.simtk.mol.toon.BasePairConnectorStick
        • org.simtk.mol.toon.BasePairOval
          • org.simtk.mol.toon.BasePairBrick
        • org.simtk.mol.toon.CappedBondActor
        • org.simtk.mol.toon.DuplexResidueWedge
      • org.simtk.mol.toon.WireFrameActor
    • org.simtk.mol.toon.MoleculeBlobActor
    • org.simtk.mol.toon.MoleculeTensorActor
    • org.simtk.mol.toon.NewDuplexCylinderActor
    • org.simtk.mol.toon.ProteinRibbonSegment
      • org.simtk.mol.toon.BetaStrandRibbon
      • org.simtk.mol.toon.ProteinCoil
      • org.simtk.mol.toon.ProteinHelix
  • org.simtk.mol.color.AtomColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.toon.secstruct.BasePairPosition
  • org.simtk.toon.secstruct.BasePosition
  • org.simtk.mol.color.BlockComplementaryBaseColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.mol.toon.BoundingBox
  • org.simtk.tornado.command.BrowserLaunchAction (implements java.awt.event.ActionListener)
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • vtk.vtkPanel (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • org.simtk.moleculargraphics.PublicNativeVtkPanel
        • org.simtk.moleculargraphics.StructureCanvas (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.util.Observer)
          • org.simtk.moleculargraphics.Tornado3DCanvas (implements java.awt.event.ComponentListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, org.simtk.moleculargraphics.ResidueCenterListener, org.simtk.moleculargraphics.ResidueHighlightListener)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.simtk.moleculargraphics.BufferedCanvas (implements java.awt.event.ComponentListener)
            • org.simtk.moleculargraphics.SequenceCanvas (implements java.util.Observer)
              • org.simtk.moleculargraphics.TornadoSequenceCanvas (implements java.awt.event.AdjustmentListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, org.simtk.moleculargraphics.ResidueCenterListener, org.simtk.moleculargraphics.ResidueHighlightListener)
            • org.simtk.moleculargraphics.SequenceCartoonCanvas (implements org.simtk.moleculargraphics.ActiveMoleculeListener, java.awt.event.AdjustmentListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, org.simtk.moleculargraphics.ResidueHighlightListener)
          • org.simtk.moleculargraphics.CameraPanel
          • org.simtk.console.ConsolePanel (implements java.awt.event.MouseListener)
          • org.simtk.moleculargraphics.CylinderPanel (implements java.awt.event.ActionListener, java.awt.event.MouseMotionListener)
          • org.simtk.toon.secstruct.SecondaryStructureCanvas (implements java.awt.event.ComponentListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, org.simtk.moleculargraphics.ResidueHighlightListener)
          • org.simtk.moleculargraphics.vtkSwingPanel (implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
          • org.simtk.moleculargraphics.SequencePane (implements org.simtk.moleculargraphics.ActiveMoleculeListener, org.simtk.moleculargraphics.ResidueCenterListener, org.simtk.moleculargraphics.ResidueHighlightListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.simtk.moleculargraphics.MolApp
              • org.simtk.moleculargraphics.EthaneDemo (implements javax.swing.event.ChangeListener)
              • org.simtk.moleculargraphics.TestMenu
              • org.simtk.tornado.Tornado
        • org.simtk.splashscreen.SplashWindow
  • org.simtk.mol.color.ConstantColor (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.mol.color.DefaultColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.parser.eg1 (implements org.simtk.parser.eg1Constants)
  • org.simtk.parser.eg1TokenManager (implements org.simtk.parser.eg1Constants)
  • org.simtk.splashscreen.EthaneSplasher
  • org.simtk.moleculargraphics.GraphicsCylinder
  • org.simtk.mol.toon.HidableActorClass (implements org.simtk.mol.toon.Hidable)
  • org.simtk.mol.color.HighlightColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.mol.toon.MoleculeCartoonClass (implements org.simtk.mol.toon.MoleculeCartoon)
    • org.simtk.mol.toon.AtomSpheres
    • org.simtk.mol.toon.BackboneCurve
    • org.simtk.mol.toon.BackboneTubeCartoon
    • org.simtk.mol.toon.BaseConnectorTube
    • org.simtk.mol.toon.BaseStickTube
    • org.simtk.mol.toon.CompositeCartoon
      • org.simtk.mol.toon.BallAndStickCartoon
      • org.simtk.mol.toon.BasePairRibbon
      • org.simtk.mol.toon.FineRibbonCartoon
      • org.simtk.mol.toon.RopeAndCylinder
      • org.simtk.mol.toon.TubeAndStickTrace
    • org.simtk.mol.toon.DuplexCylinderCartoon
    • org.simtk.mol.toon.MoleculeBlobs
    • org.simtk.mol.toon.MoleculeTensorCartoon
    • org.simtk.mol.toon.ProteinRibbon
    • org.simtk.mol.toon.ResidueSpheres
    • org.simtk.mol.toon.RichardsonProteinRibbon
    • org.simtk.mol.toon.WireFrame
  • org.simtk.mol.color.MoleculeColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.toon.secstruct.NumberTick
  • org.simtk.tornado.command.QuitAction (implements java.awt.event.ActionListener)
  • org.simtk.parser.RasmolParser (implements org.simtk.parser.RasmolParserConstants)
  • org.simtk.parser.RasmolParserTokenManager (implements org.simtk.parser.RasmolParserConstants)
  • org.simtk.moleculargraphics.ResidueCenterBroadcaster
  • org.simtk.mol.color.ResidueColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.moleculargraphics.ResidueHighlightBroadcaster
  • org.simtk.moleculargraphics.ScaleBar (implements java.awt.event.ComponentListener)
  • org.simtk.toon.secstruct.SecondaryStructureDiagramClass (implements org.simtk.toon.secstruct.SecondaryStructureDiagram)
    • org.simtk.toon.secstruct.NussinovDiagram
  • org.simtk.mol.color.SequencingNucleotideColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.parser.SimpleCharStream
  • org.simtk.moleculargraphics.Spline3D
  • java.lang.Thread (implements java.lang.Runnable)
    • org.simtk.moleculargraphics.InertialRotationThread
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Error
      • org.simtk.parser.TokenMgrError
    • java.lang.Exception
      • org.simtk.mol.toon.NoCartoonCreatedException
      • org.simtk.parser.ParseException
      • org.simtk.mol.color.UnknownObjectColorException
  • org.simtk.parser.Token
  • org.simtk.mol.toon.ToonColors
  • org.simtk.mol.color.TornadoAminoAcidColorScheme (implements org.simtk.mol.color.ColorScheme)
  • org.simtk.splashscreen.TornadoSplasher
  • org.simtk.moleculargraphics.VTKLibraries
  • vtk.vtkObjectBase
    • vtk.vtkObject
      • vtk.vtkAlgorithm
        • vtk.vtkDataSetAlgorithm
          • vtk.vtkProgrammableFilter
            • org.simtk.mol.toon.vtkArrowWidthFilter
            • org.simtk.mol.toon.vtkGrowPointsFilter
            • org.simtk.mol.toon.vtkPreExtrusionCenteringFilter
            • org.simtk.mol.toon.vtkRoundScalarsFilter
            • org.simtk.mol.toon.vtkSetScalarsFilter
            • org.simtk.mol.toon.vtkTaperedWidthFilter

Interface Hierarchy

• org.simtk.moleculargraphics.ActiveMoleculeListener
• org.simtk.mol.toon.BaseCartoon
  • org.simtk.mol.toon.ActorCartoon
  • org.simtk.mol.toon.MoleculeCartoon
• org.simtk.mol.color.Colorable
• org.simtk.mol.color.ColorScheme
• org.simtk.parser.eg1Constants
• org.simtk.mol.toon.Hidable
• org.simtk.parser.RasmolParserConstants
• org.simtk.moleculargraphics.ResidueCenterListener
• org.simtk.moleculargraphics.ResidueHighlightListener
• org.simtk.toon.secstruct.SecondaryStructureDiagram

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.simtk.moleculargraphics.RotationStyle