SimTKmolmodel.h

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00001 #ifndef SimTK_MOLMODEL_SimTKMOLMODEL_H_
00002 #define SimTK_MOLMODEL_SimTKMOLMODEL_H_
00003 
00004 /* -------------------------------------------------------------------------- *
00005  *                      SimTK Core: SimTK Molmodel                            *
00006  * -------------------------------------------------------------------------- *
00007  * This is part of the SimTK Core biosimulation toolkit originating from      *
00008  * Simbios, the NIH National Center for Physics-Based Simulation of           *
00009  * Biological Structures at Stanford, funded under the NIH Roadmap for        *
00010  * Medical Research, grant U54 GM072970. See https://simtk.org.               *
00011  *                                                                            *
00012  * Portions copyright (c) 2007 Stanford University and the Authors.           *
00013  * Authors: Christopher Bruns                                                 *
00014  * Contributors:                                                              *
00015  *                                                                            *
00016  * Permission is hereby granted, free of charge, to any person obtaining a    *
00017  * copy of this software and associated documentation files (the "Software"), *
00018  * to deal in the Software without restriction, including without limitation  *
00019  * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
00020  * and/or sell copies of the Software, and to permit persons to whom the      *
00021  * Software is furnished to do so, subject to the following conditions:       *
00022  *                                                                            *
00023  * The above copyright notice and this permission notice shall be included in *
00024  * all copies or substantial portions of the Software.                        *
00025  *                                                                            *
00026  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
00027  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
00028  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
00029  * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
00030  * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
00031  * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
00032  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
00033  * -------------------------------------------------------------------------- */
00034 
00040 #include "SimTKsimbody.h"
00041 #include "molmodel/internal/units.h"
00042 #include "molmodel/internal/bondGeometry.h"
00043 #include "molmodel/internal/Element.h"
00044 #include "molmodel/internal/Biotype.h"
00045 #include "molmodel/internal/Compound.h"
00046 #include "molmodel/internal/Protein.h"
00047 #include "molmodel/internal/RNA.h"
00048 #include "molmodel/internal/Ions.h"
00049 #include "molmodel/internal/DuMMForceFieldSubsystem.h"
00050 #include "molmodel/internal/TinkerDuMMForceFieldSubsystem.h"
00051 #include "molmodel/internal/MolecularMechanicsSystem.h"
00052 #include "molmodel/internal/CompoundSystem.h"
00053 #include "molmodel/internal/PDBReader.h"
00054 #include "molmodel/internal/Pdb.h"
00055 #include "molmodel/internal/Superpose.h"
00056 #include "molmodel/internal/PeriodicPdbWriter.h"
00057 #include "molmodel/internal/VanderWallSphere.h"
00058 #include "molmodel/internal/RiboseMobilizer.h"
00059 #include "molmodel/internal/PeriodicVmdReporter.h"
00060 #include "molmodel/internal/VelocityRescalingThermostat.h"
00061 
00062 #endif // SimTK_MOLMODEL_SimTKMOLMODEL_H_