- a -

• atomIndex : SimTK::VanDerWaalsForce::VdwAtom
• atoms : SimTK::AtomSubsystem::AtomsByBody
• atomSubsystem : SimTK::VanDerWaalsForce

- b -

• bodyExclusions : SimTK::AtomSubsystem::AtomsByBody
• bodyIx : SimTK::CompoundModeler::RigidUnit , SimTK::AtomSubsystem::AtomsByBody

- c -

• center : SimTK::VanDerWaalsForce::WallSphere
• clusterAtoms : SimTK::CompoundModeler::RigidUnit
• clusterIx : SimTK::CompoundModeler::AtomBonding
• compoundModeler : SimTK::CompoundModeler::RigidUnit
• cutoff : SimTK::VanDerWaalsForce
• cutoffSquared : SimTK::VanDerWaalsForce

- e -

• energy : SimTK::VanDerWaalsForce::ForceAndEnergy

- f -

• force : SimTK::VanDerWaalsForce::ForceAndEnergy
• frameInParentFrame : SimTK::CompoundModeler::RigidUnit
• frameInTopCompoundFrame : SimTK::CompoundModeler::RigidUnit
• freeTreeBonds : SimTK::CompoundModeler::AtomBonding

- i -

• inboardBondCenterIndex : SimTK::CompoundModeler::RigidUnit
• inboardBondDihedralAngle : SimTK::CompoundModeler::RigidUnit
• inboardBondIndex : SimTK::CompoundModeler::RigidUnit
• insertionCode : SimTK::PdbResidueId
• InvalidAtomicNumber : SimTK::Element

- l -

• locationInBodyFrame : SimTK::CompoundModeler::AtomBonding

- m -

• myIndex : SimTK::CompoundModeler::RigidUnit

- n -

• numBuckets : SimTK::VoxelHash< T >::VoxelIndex

- p -

• parentAtomIndex : SimTK::CompoundModeler::AtomBonding
• parentId : SimTK::CompoundModeler::RigidUnit

- r -

• radius : SimTK::VanDerWaalsForce::WallSphere
• residual : SimTK::TransformAndResidual
• residueNumber : SimTK::PdbResidueId
• rMin : SimTK::VanDerWaalsForce::VdwAtom

- t -

• transform : SimTK::TransformAndResidual
• treeBonds : SimTK::CompoundModeler::AtomBonding

- v -

• vdwAtoms : SimTK::VanDerWaalsForce
• vdwRadius : SimTK::VanDerWaalsForce::WallSphere

- w -

• wallSpheres : SimTK::VanDerWaalsForce
• wellDepth : SimTK::VanDerWaalsForce::WallSphere , SimTK::VanDerWaalsForce::VdwAtom

- x -

• x : SimTK::VoxelHash< T >::VoxelIndex

- y -

• y : SimTK::VoxelHash< T >::VoxelIndex

- z -

• z : SimTK::VoxelHash< T >::VoxelIndex