- a -

• addAcceptor() : CustomHbondForce
• addAngle() : CustomAngleForce , HarmonicAngleForce
• addBond() : CustomBondForce , GBVIForce , HarmonicBondForce
• addComputedValue() : CustomGBForce
• addConstraint() : System
• addDonor() : CustomHbondForce
• addEnergyTerm() : CustomGBForce
• addException() : NonbondedForce
• addExclusion() : CustomGBForce , CustomHbondForce , CustomNonbondedForce
• addForce() : System
• addFunction() : CustomGBForce , CustomHbondForce , CustomNonbondedForce
• addGlobalParameter() : CustomAngleForce , CustomBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• addMap() : CMAPTorsionForce
• addParticle() : NonbondedForce , System , GBVIForce , CustomExternalForce , CustomGBForce , CustomNonbondedForce , GBSAOBCForce
• addPerAcceptorParameter() : CustomHbondForce
• addPerAngleParameter() : CustomAngleForce
• addPerBondParameter() : CustomBondForce
• addPerDonorParameter() : CustomHbondForce
• addPerParticleParameter() : CustomNonbondedForce , CustomExternalForce , CustomGBForce
• addPerTorsionParameter() : CustomTorsionForce
• addTorsion() : RBTorsionForce , PeriodicTorsionForce , CustomTorsionForce , CMAPTorsionForce
• AndersenThermostat() : AndersenThermostat
• AndersenThermostatImpl() : AndersenThermostatImpl
• applyConstraints() : ContextImpl , Context