Here is a list of all class members with links to the classes they belong to:

- a -

• addAcceptor() : CustomHbondForce
• addAngle() : AmoebaHarmonicAngleForce , CustomAngleForce , HarmonicAngleForce , AmoebaHarmonicInPlaneAngleForce
• addAtom() : Topology
• addBond() : CustomBondForce , GBVIForce , GBVISoftcoreForce , HarmonicBondForce , Topology , AmoebaHarmonicBondForce
• addChain() : Topology
• addComputedValue() : CustomGBForce
• addComputeGlobal() : CustomIntegrator
• addComputePerDof() : CustomIntegrator
• addComputeSum() : CustomIntegrator
• addConstrainPositions() : CustomIntegrator
• addConstraint() : System
• addConstrainVelocities() : CustomIntegrator
• addDonor() : CustomHbondForce
• addEnergyTerm() : CustomGBForce
• addException() : NonbondedForce , NonbondedSoftcoreForce
• addException_usingRMin() : NonbondedForce
• addExclusion() : CustomGBForce , CustomHbondForce , CustomNonbondedForce
• addForce() : System
• addFunction() : CustomNonbondedForce , CustomGBForce , CustomHbondForce
• addGlobalParameter() : CustomAngleForce , CustomBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• addGlobalVariable() : CustomIntegrator
• addHydrogens() : Modeller
• addMap() : CMAPTorsionForce
• addOutOfPlaneBend() : AmoebaOutOfPlaneBendForce
• addParticle() : AmoebaWcaDispersionForce , AmoebaGeneralizedKirkwoodForce , AmoebaMultipoleForce , AmoebaVdwForce , CustomExternalForce , CustomGBForce , CustomNonbondedForce , GBSAOBCForce , GBSAOBCSoftcoreForce , GBVIForce , GBVISoftcoreForce , NonbondedForce , NonbondedSoftcoreForce , System
• addParticle_usingRVdw() : NonbondedForce
• addPerAcceptorParameter() : CustomHbondForce
• addPerAngleParameter() : CustomAngleForce
• addPerBondParameter() : CustomBondForce
• addPerDofVariable() : CustomIntegrator
• addPerDonorParameter() : CustomHbondForce
• addPerParticleParameter() : CustomExternalForce , CustomNonbondedForce , CustomGBForce
• addPerTorsionParameter() : CustomTorsionForce
• addPiTorsion() : AmoebaPiTorsionForce
• addResidue() : Topology
• addSolvent() : Modeller
• addStretchBend() : AmoebaStretchBendForce
• addTorsion() : CustomTorsionForce , RBTorsionForce , CMAPTorsionForce , AmoebaTorsionForce , PeriodicTorsionForce
• addTorsionTorsion() : AmoebaTorsionTorsionForce
• addUpdateContextState() : CustomIntegrator
• addUreyBradley() : AmoebaUreyBradleyForce
• applyConstraints() : Context
• atomic_number : Element
• atoms() : Residue , Topology , Chain