Here is a list of all class members with links to the classes they belong to:

- a -

• add() : Modeller
• addAcceptor() : CustomHbondForce
• addAngle() : AmoebaInPlaneAngleForce , CustomAngleForce , AmoebaAngleForce , HarmonicAngleForce
• addAtom() : Topology
• addBond() : AmoebaBondForce , CustomBondForce , CustomCompoundBondForce , GBVIForce , HarmonicBondForce , Topology
• addChain() : Topology
• addComputedValue() : CustomGBForce
• addComputeGlobal() : CustomIntegrator
• addComputePerDof() : CustomIntegrator
• addComputeSum() : CustomIntegrator
• addConstrainPositions() : CustomIntegrator
• addConstraint() : System
• addConstrainVelocities() : CustomIntegrator
• addDonor() : CustomHbondForce
• addEnergyTerm() : CustomGBForce
• addException() : NonbondedForce
• addException_usingRMin() : NonbondedForce
• addExclusion() : CustomGBForce , CustomHbondForce , CustomNonbondedForce
• addForce() : System
• addFunction() : CustomHbondForce , CustomNonbondedForce , CustomCompoundBondForce , CustomGBForce
• addGlobalParameter() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• addGlobalVariable() : CustomIntegrator
• addHydrogens() : Modeller
• addMap() : CMAPTorsionForce
• addMultipole() : AmoebaMultipoleForce
• addOutOfPlaneBend() : AmoebaOutOfPlaneBendForce
• addParticle() : NonbondedForce , AmoebaGeneralizedKirkwoodForce , AmoebaVdwForce , AmoebaWcaDispersionForce , CustomExternalForce , CustomGBForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , System
• addParticle_usingRVdw() : NonbondedForce
• addPerAcceptorParameter() : CustomHbondForce
• addPerAngleParameter() : CustomAngleForce
• addPerBondParameter() : CustomCompoundBondForce , CustomBondForce
• addPerDofVariable() : CustomIntegrator
• addPerDonorParameter() : CustomHbondForce
• addPerParticleParameter() : CustomExternalForce , CustomGBForce , CustomNonbondedForce
• addPerTorsionParameter() : CustomTorsionForce
• addPiTorsion() : AmoebaPiTorsionForce
• addResidue() : Topology
• addSolvent() : Modeller
• addStretchBend() : AmoebaStretchBendForce
• addTorsion() : CMAPTorsionForce , RBTorsionForce , PeriodicTorsionForce , CustomTorsionForce
• addTorsionTorsion() : AmoebaTorsionTorsionForce
• addUpdateContextState() : CustomIntegrator
• applyConstraints() : Context
• applyVelocityConstraints() : Context
• atomic_number : Element
• atomNames : GromacsGroFile
• atoms() : Residue , Topology , Chain