Here is a list of all class members with links to the classes they belong to:

- s -

• serialize() : XmlSerializer
• setAcceptorParameters() : CustomHbondForce
• setAngleParameters() : HarmonicAngleForce , CustomAngleForce
• setBondParameters() : HarmonicBondForce , CustomBondForce , CustomCompoundBondForce , GBVIForce
• setBornRadiusScalingMethod() : GBVIForce
• setComputedValueParameters() : CustomGBForce
• setConstraintParameters() : System
• setConstraintTolerance() : Integrator
• setCutoffDistance() : GBSAOBCForce , GBVIForce , NonbondedForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce
• setDefaultPeriodicBoxVectors() : System
• setDonorParameters() : CustomHbondForce
• setEnergy() : State
• setEnergyFunction() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• setEnergyTermParameters() : CustomGBForce
• setErrorTolerance() : VariableLangevinIntegrator , VariableVerletIntegrator
• setEwaldErrorTolerance() : NonbondedForce
• setExceptionParameters() : NonbondedForce
• setExclusionParticles() : CustomGBForce , CustomHbondForce , CustomNonbondedForce
• setForceGroup() : Force
• setForces() : State
• setFrequency() : CMMotionRemover , MonteCarloAnisotropicBarostat , MonteCarloBarostat
• setFriction() : BrownianIntegrator , LangevinIntegrator , VariableLangevinIntegrator
• setFunctionParameters() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce
• setGlobalParameterDefaultValue() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• setGlobalParameterName() : CustomTorsionForce , CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce
• setGlobalVariable() : CustomIntegrator
• setGlobalVariableByName() : CustomIntegrator
• setInteractionGroupParameters() : CustomNonbondedForce
• setKineticEnergyExpression() : CustomIntegrator
• setMapParameters() : CMAPTorsionForce
• setNonbondedMethod() : CustomGBForce , CustomHbondForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , NonbondedForce
• setParameter() : Context , ContextImpl
• setParameters() : State
• setParticleMass() : System
• setParticleParameters() : CustomExternalForce , CustomGBForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , NonbondedForce
• setParticles() : VirtualSite
• setPerAcceptorParameterName() : CustomHbondForce
• setPerAngleParameterName() : CustomAngleForce
• setPerBondParameterName() : CustomBondForce , CustomCompoundBondForce
• setPerDofVariable() : CustomIntegrator
• setPerDofVariableByName() : CustomIntegrator
• setPerDonorParameterName() : CustomHbondForce
• setPeriodicBoxVectors() : ContextImpl , Context , State
• setPerParticleParameterName() : CustomExternalForce , CustomGBForce , CustomNonbondedForce
• setPerTorsionParameterName() : CustomTorsionForce
• setPlatformData() : ContextImpl
• setPositions() : Context , State , ContextImpl
• setPropertyDefaultValue() : Platform
• setPropertyValue() : Platform
• setQuinticLowerLimitFactor() : GBVIForce
• setQuinticUpperBornRadiusLimit() : GBVIForce
• setRandomNumberSeed() : VariableLangevinIntegrator , CustomIntegrator , AndersenThermostat , BrownianIntegrator , LangevinIntegrator , MonteCarloAnisotropicBarostat , MonteCarloBarostat
• setReactionFieldDielectric() : NonbondedForce
• setReciprocalSpaceForceGroup() : NonbondedForce
• setSoluteDielectric() : GBSAOBCForce , GBVIForce
• setSolventDielectric() : GBVIForce , GBSAOBCForce
• setState() : Context
• setStepSize() : Integrator
• setSwitchingDistance() : NonbondedForce , CustomNonbondedForce
• setTemperature() : MonteCarloAnisotropicBarostat , MonteCarloBarostat , VariableLangevinIntegrator , BrownianIntegrator , LangevinIntegrator
• setTime() : Context , ContextImpl
• setTorsionParameters() : RBTorsionForce , PeriodicTorsionForce , CustomTorsionForce , CMAPTorsionForce
• setUseDispersionCorrection() : NonbondedForce
• setUseLongRangeCorrection() : CustomNonbondedForce
• setUseSwitchingFunction() : NonbondedForce , CustomNonbondedForce
• setVelocities() : ContextImpl , State , Context
• setVelocitiesToTemperature() : Context
• setVirtualSite() : System
• SingleParticle : CustomGBForce
• State() : State
• StateBuilder() : State
• stateChanged() : Integrator , CustomIntegrator
• step() : Integrator , VariableLangevinIntegrator , CustomIntegrator , VariableVerletIntegrator , LangevinIntegrator , BrownianIntegrator , VerletIntegrator
• stepTo() : VariableVerletIntegrator , VariableLangevinIntegrator
• supportsDoublePrecision() : Platform
• supportsKernels() : Platform
• System() : System