API
4.5.1
For C++ developers
|
This class serves as a serializable ActiveForceLengthCurve, commonly used to model the active element in muscle models. More...
OpenSim Properties, Sockets, Outputs, Inputs | |
Properties (single-value) | |
double | min_norm_active_fiber_length |
"Normalized fiber length where the steep ascending limb starts" More... | |
double | transition_norm_fiber_length |
"Normalized fiber length where the steep ascending limb transitions to the shallow ascending limb" More... | |
double | max_norm_active_fiber_length |
"Normalized fiber length where the descending limb ends" More... | |
double | shallow_ascending_slope |
"Slope of the shallow ascending limb" More... | |
double | minimum_value |
"Minimum value of the active-force-length curve" More... | |
Public Member Functions | |
ActiveForceLengthCurve () | |
The default constructor creates an active-force-length curve using the default property values and assigns a default name. More... | |
ActiveForceLengthCurve (double minActiveNormFiberLength, double transitionNormFiberLength, double maxActiveNormFiberLength, double shallowAscendingSlope, double minimumValue) | |
Constructs an active-force-length curve using the provided parameters and assigns a default name. More... | |
double | getMinActiveFiberLength () const |
double | getTransitionFiberLength () const |
double | getMaxActiveFiberLength () const |
double | getShallowAscendingSlope () const |
double | getMinValue () const |
void | setActiveFiberLengths (double minActiveNormFiberLength, double transitionNormFiberLength, double maxActiveNormFiberLength, double shallowAscendingSlope) |
More... | |
void | setMinValue (double minimumValue) |
More... | |
double | calcValue (const SimTK::Vector &x) const override |
Implement the generic OpenSim::Function interface. More... | |
double | calcValue (double normFiberLength) const |
Evaluates the active-force-length curve at a normalized fiber length of 'normFiberLength'. More... | |
SmoothSegmentedFunction::ValueAndDerivative | calcValueAndDerivative (double normFiberLength) const |
Evaluates the active-force-length curve value and derivative at a normalized fiber length of 'normFiberLength'. More... | |
double | calcDerivative (double normFiberLength, int order) const |
Calculates the derivative of the active-force-length multiplier with respect to the normalized fiber length. More... | |
double | calcDerivative (const std::vector< int > &derivComponents, const SimTK::Vector &x) const override |
If possible, use the simpler overload above. More... | |
SimTK::Vec2 | getCurveDomain () const |
Returns a SimTK::Vec2 containing the lower (0th element) and upper (1st element) bounds on the domain of the curve. More... | |
void | printMuscleCurveToCSVFile (const std::string &path) |
Generates a .csv file with a name that matches the curve name (e.g., "bicepsfemoris_ActiveForceLengthCurve.csv"). More... | |
void | ensureCurveUpToDate () |
Property-related functions | |
const double & | get_min_norm_active_fiber_length () const |
Get the value of the min_norm_active_fiber_length property. More... | |
double & | upd_min_norm_active_fiber_length () |
Get a writable reference to the min_norm_active_fiber_length property. More... | |
void | set_min_norm_active_fiber_length (const double &value) |
Set the value of the min_norm_active_fiber_length property. More... | |
const double & | get_transition_norm_fiber_length () const |
Get the value of the transition_norm_fiber_length property. More... | |
double & | upd_transition_norm_fiber_length () |
Get a writable reference to the transition_norm_fiber_length property. More... | |
void | set_transition_norm_fiber_length (const double &value) |
Set the value of the transition_norm_fiber_length property. More... | |
const double & | get_max_norm_active_fiber_length () const |
Get the value of the max_norm_active_fiber_length property. More... | |
double & | upd_max_norm_active_fiber_length () |
Get a writable reference to the max_norm_active_fiber_length property. More... | |
void | set_max_norm_active_fiber_length (const double &value) |
Set the value of the max_norm_active_fiber_length property. More... | |
const double & | get_shallow_ascending_slope () const |
Get the value of the shallow_ascending_slope property. More... | |
double & | upd_shallow_ascending_slope () |
Get a writable reference to the shallow_ascending_slope property. More... | |
void | set_shallow_ascending_slope (const double &value) |
Set the value of the shallow_ascending_slope property. More... | |
const double & | get_minimum_value () const |
Get the value of the minimum_value property. More... | |
double & | upd_minimum_value () |
Get a writable reference to the minimum_value property. More... | |
void | set_minimum_value (const double &value) |
Set the value of the minimum_value property. More... | |
Public Member Functions inherited from OpenSim::Function | |
Function () | |
Function (const Function &aFunction) | |
virtual | ~Function () |
virtual void | init (Function *aFunction) |
Function & | operator= (const Function &aFunction) |
virtual int | getArgumentSize () const |
Get the number of components expected in the input vector. More... | |
virtual int | getMaxDerivativeOrder () const |
Get the maximum derivative order this Function object can calculate. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
Public Member Functions inherited from OpenSim::Object | |
virtual | ~Object () |
Virtual destructor for cleanup. More... | |
bool | isEqualTo (const Object &aObject) const |
Equality operator wrapper for use from languages not supporting operator overloading. More... | |
Object & | operator= (const Object &aObject) |
Copy assignment copies he base class fields, including the properties. More... | |
virtual bool | operator== (const Object &aObject) const |
Determine if two objects are equal. More... | |
virtual bool | operator< (const Object &aObject) const |
Provide an ordering for objects so they can be put in sorted containers. More... | |
void | setName (const std::string &name) |
Set the name of the Object. More... | |
const std::string & | getName () const |
Get the name of this Object. More... | |
void | setDescription (const std::string &description) |
Set description, a one-liner summary. More... | |
const std::string & | getDescription () const |
Get description, a one-liner summary. More... | |
const std::string & | getAuthors () const |
Get Authors of this Object. More... | |
void | setAuthors (const std::string &authors) |
Set Authors of this object. More... | |
const std::string & | getReferences () const |
Get references or publications to cite if using this object. More... | |
void | setReferences (const std::string &references) |
Set references or publications to cite if using this object. More... | |
int | getNumProperties () const |
Determine how many properties are stored with this Object. More... | |
const AbstractProperty & | getPropertyByIndex (int propertyIndex) const |
Get a const reference to a property by its index number, returned as an AbstractProperty. More... | |
AbstractProperty & | updPropertyByIndex (int propertyIndex) |
Get a writable reference to a property by its index number, returned as an AbstractProperty. More... | |
bool | hasProperty (const std::string &name) const |
Return true if this Object has a property of any type with the given name, which must not be empty. More... | |
const AbstractProperty & | getPropertyByName (const std::string &name) const |
Get a const reference to a property by its name, returned as an AbstractProperty. More... | |
AbstractProperty & | updPropertyByName (const std::string &name) |
Get a writable reference to a property by its name, returned as an AbstractProperty. More... | |
template<class T > | |
bool | hasProperty () const |
Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. More... | |
template<class T > | |
const Property< T > & | getProperty (const PropertyIndex &index) const |
Get property of known type Property<T> as a const reference; the property must be present and have the right type. More... | |
template<class T > | |
const Property< T > & | getPropertyByName (const std::string &name) const |
Get property of known type Property<T> as a const reference; the property must be present and have the right type. More... | |
template<class T > | |
Property< T > & | updProperty (const PropertyIndex &index) |
Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More... | |
template<class T > | |
Property< T > & | updPropertyByName (const std::string &name) |
Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More... | |
bool | isObjectUpToDateWithProperties () const |
Returns true if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. More... | |
void | readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber) |
We're given an XML element from which we are to populate this Object. More... | |
virtual void | updateFromXMLNode (SimTK::Xml::Element &objectElement, int versionNumber) |
Use this method to deserialize an object from a SimTK::Xml::Element. More... | |
void | updateXMLNode (SimTK::Xml::Element &parent, const AbstractProperty *prop=nullptr) const |
Serialize this object into the XML node that represents it. More... | |
bool | getInlined () const |
Inlined means an in-memory Object that is not associated with an XMLDocument. More... | |
void | setInlined (bool aInlined, const std::string &aFileName="") |
Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. More... | |
std::string | getDocumentFileName () const |
If there is a document associated with this object then return the file name maintained by the document. More... | |
int | getDocumentFileVersion () const |
If there is a document associated with this object then return its version number. More... | |
void | setAllPropertiesUseDefault (bool aUseDefault) |
bool | print (const std::string &fileName) const |
Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". More... | |
std::string | dump () const |
dump the XML representation of this Object into an std::string and return it. More... | |
virtual bool | isA (const char *type) const |
The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. More... | |
const std::string & | toString () const |
Wrapper to be used on Java side to display objects in tree; this returns just the object's name. More... | |
PropertySet & | getPropertySet () |
OBSOLETE: Get a reference to the PropertySet maintained by the Object. More... | |
const PropertySet & | getPropertySet () const |
Public Types | |
typedef ActiveForceLengthCurve | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Function | Super |
Use this typedef to refer to the superclass of this class. More... | |
Public Types inherited from OpenSim::Function | |
typedef Function | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Object | Super |
Use this typedef to refer to the superclass of this class. More... | |
Auto-generated functions | |
static ActiveForceLengthCurve * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "ActiveForceLengthCurve". More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
ActiveForceLengthCurve * | clone () const override |
Create a new heap-allocated copy of the concrete object to which this Object refers. More... | |
const std::string & | getConcreteClassName () const override |
Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from OpenSim::Function | |
static Function * | makeFunctionOfType (Function *aFunction, const std::string &aNewTypeName) |
static Function * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "Function". More... | |
Static Public Member Functions inherited from OpenSim::Object | |
static void | registerType (const Object &defaultObject) |
Register an instance of a class; if the class is already registered it will be replaced. More... | |
static void | renameType (const std::string &oldTypeName, const std::string &newTypeName) |
Support versioning by associating the current Object type with an old name. More... | |
static const Object * | getDefaultInstanceOfType (const std::string &concreteClassName) |
Return a pointer to the default instance of the registered (concrete) Object whose class name is given, or NULL if the type is not registered. More... | |
template<class T > | |
static bool | isObjectTypeDerivedFrom (const std::string &concreteClassName) |
Return true if the given concrete object type represents a subclass of the template object type T, and thus could be referenced with a T*. More... | |
static Object * | newInstanceOfType (const std::string &concreteClassName) |
Create a new instance of the concrete Object type whose class name is given as concreteClassName. More... | |
static void | getRegisteredTypenames (Array< std::string > &typeNames) |
Retrieve all the typenames registered so far. More... | |
template<class T > | |
static void | getRegisteredObjectsOfGivenType (ArrayPtrs< T > &rArray) |
Return an array of pointers to the default instances of all registered (concrete) Object types that derive from a given Object-derived type that does not have to be concrete. More... | |
static bool | PrintPropertyInfo (std::ostream &os, const std::string &classNameDotPropertyName, bool printFlagInfo=true) |
Dump formatted property information to a given output stream, useful for creating a "help" facility for registered objects. More... | |
static bool | PrintPropertyInfo (std::ostream &os, const std::string &className, const std::string &propertyName, bool printFlagInfo=true) |
Same as the other signature but the class name and property name are provided as two separate strings. More... | |
static Object * | makeObjectFromFile (const std::string &fileName) |
Create an OpenSim object whose type is based on the tag at the root node of the XML file passed in. More... | |
static const std::string & | getClassName () |
Return the name of this class as a string; i.e., "Object". More... | |
static void | setSerializeAllDefaults (bool shouldSerializeDefaults) |
Static function to control whether all registered objects and their properties are written to the defaults section of output files rather than only those values for which the default was explicitly overwritten when read in from an input file or set programmatically. More... | |
static bool | getSerializeAllDefaults () |
Report the value of the "serialize all defaults" flag. More... | |
static bool | isKindOf (const char *type) |
Returns true if the passed-in string is "Object"; each Object-derived class defines a method of this name for its own class name. More... | |
static void | setDebugLevel (int newLevel) |
Set the amount of logging output. More... | |
static int | getDebugLevel () |
Get the current setting of debug level. More... | |
static Object * | SafeCopy (const Object *aObject) |
Use the clone() method to duplicate the given object unless the pointer is null in which case null is returned. More... | |
static void | RegisterType (const Object &defaultObject) |
OBSOLETE alternate name for registerType(). More... | |
static void | RenameType (const std::string &oldName, const std::string &newName) |
OBSOLETE alternate name for renameType(). More... | |
Static Public Attributes inherited from OpenSim::Object | |
static const std::string | DEFAULT_NAME |
Name used for default objects when they are serialized. More... | |
Protected Member Functions inherited from OpenSim::Function | |
void | resetFunction () |
This should be called whenever this object has been modified. More... | |
Protected Member Functions inherited from OpenSim::Object | |
Object () | |
The default constructor is only for use by constructors of derived types. More... | |
Object (const std::string &fileName, bool aUpdateFromXMLNode=true) | |
Constructor from a file, to be called from other constructors that take a file as input. More... | |
Object (const Object &source) | |
Copy constructor is invoked automatically by derived classes with default copy constructors; otherwise it must be invoked explicitly. More... | |
Object (SimTK::Xml::Element &aElement) | |
Construct the base class portion of an Object from a given Xml element that describes this Object. More... | |
template<class T > | |
PropertyIndex | addProperty (const std::string &name, const std::string &comment, const T &value) |
Define a new single-value property of known type T, with the given name, associated comment, and initial value. More... | |
template<class T > | |
PropertyIndex | addOptionalProperty (const std::string &name, const std::string &comment) |
Add an optional property, meaning it can contain either no value or a single value. More... | |
template<class T > | |
PropertyIndex | addOptionalProperty (const std::string &name, const std::string &comment, const T &value) |
Add an optional property, meaning it can contain either no value or a single value. More... | |
template<class T > | |
PropertyIndex | addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize) |
Define a new list-valued property of known type T, with the given name, associated comment, minimum (==0) and maximum (>0) allowable list lengths, and a zero-length initial value. More... | |
template<class T , template< class > class Container> | |
PropertyIndex | addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize, const Container< T > &valueList) |
Define a new list-valued property as above, but assigning an initial value via some templatized container class that supports size() and indexing. More... | |
PropertyIndex | getPropertyIndex (const std::string &name) const |
Look up a property by name and return its PropertyIndex if it is found. More... | |
template<class T > | |
PropertyIndex | getPropertyIndex () const |
Look up an unnamed property by the type of object it contains, and return its PropertyIndex if it is found. More... | |
template<class T > | |
void | checkPropertyValueIsPositive (const Property< T > &p) const |
Throw an exception if any of the property's values are not positive. More... | |
template<class T > | |
void | checkPropertyValueIsInSet (const Property< T > &p, const std::set< T > &set) const |
Throw an exception if any of the property's values are not in the provided set. More... | |
template<class T > | |
void | checkPropertyValueIsInRangeOrSet (const Property< T > &p, const T &lower, const T &upper, const std::set< T > &set) const |
Throw an exception if any of the property's values are neither in the provided range nor in the provided set. More... | |
void | setObjectIsUpToDateWithProperties () |
When an object is initialized using the current values of its properties, it can set a flag indicating that it is up to date. More... | |
void | clearObjectIsUpToDateWithProperties () |
For testing or debugging purposes, manually clear the "object is up to
date with respect to properties" flag. More... | |
void | makeObjectNamesConsistentWithProperties () |
Make sure the name of an object is consistent with its property type. More... | |
void | updateFromXMLDocument () |
Use this method only if you're deserializing from a file and the object is at the top level; that is, primarily in constructors that take a file name as input. More... | |
void | setDocument (XMLDocument *) |
Unconditionally set the XMLDocument associated with this object. More... | |
const XMLDocument * | getDocument () const |
Get a const pointer to the document (if any) associated with this object. More... | |
XMLDocument * | updDocument () |
Get a writable pointer to the document (if any) associated with this object. More... | |
Protected Attributes inherited from OpenSim::Function | |
SimTK::Function * | _function |
Protected Attributes inherited from OpenSim::Object | |
PropertySet | _propertySet |
OBSOLETE: Property_Deprecated set for serializable member variables of this and derived classes. More... | |
Related Functions inherited from OpenSim::Object | |
#define | OpenSim_DECLARE_CONCRETE_OBJECT(ConcreteClass, SuperClass) |
Macro to be included as the first line of the class declaration for any non-templatized, concrete class that derives from OpenSim::Object. More... | |
#define | OpenSim_DECLARE_ABSTRACT_OBJECT(ConcreteClass, SuperClass) |
Macro to be included as the first line of the class declaration for any still-abstract class that derives from OpenSim::Object. More... | |
#define | OpenSim_DECLARE_CONCRETE_OBJECT_T(ConcreteClass, TArg, SuperClass) |
Macro to be included as the first line of the class declaration for any templatized, concrete class that derives from OpenSim::Object, like Set<T>. More... | |
#define | OpenSim_DECLARE_ABSTRACT_OBJECT_T(ConcreteClass, TArg, SuperClass) |
Macro to be included as the first line of the class declaration for any templatized, still-abstract class that derives from OpenSim::Object. More... | |
This class serves as a serializable ActiveForceLengthCurve, commonly used to model the active element in muscle models.
The active-force-length curve is dimensionless: force is normalized to maximum isometric force and length is normalized to resting fiber length. Five properties are used to construct a curve:
minActiveNormFiberLength | The normalized fiber length where the steep ascending limb of the active-force-length curve transitions to the minimum value and has first and second derivatives of 0. |
transitionNormFiberLength | The normalized fiber length where the steep ascending limb transitions to the shallow ascending limb. |
maxActiveNormFiberLength | The normalized fiber length where the descending limb transitions to the minimum value and has first and second derivatives of 0. |
shallowAscendingSlope | The slope of the shallow ascending limb. |
minimumValue | The minimum value of the active-force-length curve. If you are using an equilibrium model, this value must be greater than 0, as a value of 0 will cause a singularity in the muscle dynamic equations. |
Conditions
0 < minActiveNormFiberLength < transitionNormFiberLength < 1 < maxActiveNormFiberLength 0 <= shallowAscendingSlope < 1/(1-transitionNormFiberLength) 0 <= minimumValue
Default Parameter Values The default parameters have been chosen so that the resulting curve closely matches the active-force-length curve for human sarcomeres, as documented by Nigg and Herzog (1994). The descending limb has been adjusted to match the in-vitro human fiber data reported by Gollapudi and Lin (2009). The default shoulder value is set to 0.1. This relatively large value is used to ensure that muscle model dynamic equations with an active-force-length singularity do not take an unreasonable amount of time to simulate (simulation time grows as the value of the active-force-length curve approaches 0). Muscle model formulations that do not have this singularity (e.g., the Millard2012AccelerationMuscle model) can use a minimumValue of 0.
minActiveNormFiberLength ..... 0.4441 transitionNormFiberLength .... 0.73 maxActiveNormFiberLength ..... 1.8123 shallowAscendingSlope ........ 0.8616 minimumValue ................. 0.1
Example
Note that this object should be updated through the set methods provided. These set methods will take care of rebuilding the curve correctly. If you modify the properties directly, the curve will not be rebuilt, and upon calling a function like calcValue, calcDerivative, or printCurveToCSVFile, an exception will be thrown because the curve is out-of-date with its properties.
References
This typedef might be useful within the member functions of this class.
This is generated by the OpenSim_DECLARE_*_OBJECT
macros.
Use this typedef to refer to the superclass of this class.
Avoid using the explicit type name of the superclass; this would introduce bugs if the superclass is changed.
This is generated by the OpenSim_DECLARE_*_OBJECT
macros.
OpenSim::ActiveForceLengthCurve::ActiveForceLengthCurve | ( | ) |
The default constructor creates an active-force-length curve using the default property values and assigns a default name.
OpenSim::ActiveForceLengthCurve::ActiveForceLengthCurve | ( | double | minActiveNormFiberLength, |
double | transitionNormFiberLength, | ||
double | maxActiveNormFiberLength, | ||
double | shallowAscendingSlope, | ||
double | minimumValue | ||
) |
Constructs an active-force-length curve using the provided parameters and assigns a default name.
|
inlineoverride |
This allows copy assignment in the Java GUI.
Exception | if the argument is not of type ActiveForceLengthCurve. |
double OpenSim::ActiveForceLengthCurve::calcDerivative | ( | double | normFiberLength, |
int | order | ||
) | const |
Calculates the derivative of the active-force-length multiplier with respect to the normalized fiber length.
normFiberLength | The normalized length of the muscle fiber. |
order | The order of the derivative. Only values of 0, 1, and 2 are acceptable. |
|
overridevirtual |
If possible, use the simpler overload above.
Reimplemented from OpenSim::Function.
|
inlineoverridevirtual |
Implement the generic OpenSim::Function interface.
Reimplemented from OpenSim::Function.
double OpenSim::ActiveForceLengthCurve::calcValue | ( | double | normFiberLength | ) | const |
Evaluates the active-force-length curve at a normalized fiber length of 'normFiberLength'.
SmoothSegmentedFunction::ValueAndDerivative OpenSim::ActiveForceLengthCurve::calcValueAndDerivative | ( | double | normFiberLength | ) | const |
Evaluates the active-force-length curve value and derivative at a normalized fiber length of 'normFiberLength'.
|
inlineoverridevirtual |
Create a new heap-allocated copy of the concrete object to which this Object refers.
It is up to the caller to delete the returned object when no longer needed. Every concrete object deriving from Object implements this pure virtual method automatically, via the declaration macro it invokes (e.g., OpenSim_DECLARE_CONCRETE_OBJECT()). Note that the concrete class overrides modify the return type to be a pointer to the concrete object; that still overrides the base class method because the return type is covariant with (that is, derives from) Object.
Implements OpenSim::Function.
void OpenSim::ActiveForceLengthCurve::ensureCurveUpToDate | ( | ) |
|
inline |
Get the value of the max_norm_active_fiber_length property.
|
inline |
Get the value of the min_norm_active_fiber_length property.
|
inline |
Get the value of the minimum_value property.
|
inline |
Get the value of the shallow_ascending_slope property.
|
inline |
Get the value of the transition_norm_fiber_length property.
|
inlinestatic |
This returns "ActiveForceLengthCurve".
See getConcreteClassName() if you want the class name of the underlying concrete object instead.
This is generated by the OpenSim_DECLARE_*_OBJECT
macros.
|
inlineoverridevirtual |
Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string.
This is the string that is used as the tag for this concrete object in an XML file. Every concrete class derived from Object automatically overrides this method via the declaration macro it uses. See getClassName() to get the class name of the referencing (possibly abstract) class rather than the concrete object.
Implements OpenSim::Function.
SimTK::Vec2 OpenSim::ActiveForceLengthCurve::getCurveDomain | ( | ) | const |
Returns a SimTK::Vec2 containing the lower (0th element) and upper (1st element) bounds on the domain of the curve.
Outside this domain, the curve is approximated using linear extrapolation.
double OpenSim::ActiveForceLengthCurve::getMaxActiveFiberLength | ( | ) | const |
double OpenSim::ActiveForceLengthCurve::getMinActiveFiberLength | ( | ) | const |
double OpenSim::ActiveForceLengthCurve::getMinValue | ( | ) | const |
double OpenSim::ActiveForceLengthCurve::getShallowAscendingSlope | ( | ) | const |
double OpenSim::ActiveForceLengthCurve::getTransitionFiberLength | ( | ) | const |
void OpenSim::ActiveForceLengthCurve::printMuscleCurveToCSVFile | ( | const std::string & | path | ) |
Generates a .csv file with a name that matches the curve name (e.g., "bicepsfemoris_ActiveForceLengthCurve.csv").
This function is not const to permit the curve to be rebuilt if it is out-of-date with its properties.
path | The full destination path. Note that forward slashes ('/') must be used and there should not be a slash after the last folder. |
The file will contain the following data:
column: 1 | 2 | 3 | 4 data: x | y | dy/dx | d2y/dx2
Samples will be taken from the linear extrapolation region (the region less than minActiveNormFiberLength), through the curve, out to the other linear extrapolation region (the region greater than maxActiveNormFiberLength). The width of each linear extrapolation region is 10% of the curve domain, or 0.1*(maxActiveNormFiberLength-minActiveNormFiberLength). The curve is sampled quite densely: the active-force-length .csv file will have 500+20 rows.
Example To read the .csv file into Matlab, you need to set csvread to ignore the header row. Since csvread is 0-indexed, the following example will begin reading the .csv file from the first column of the second row:
data = csvread('bicepsfemoris_ActiveForceLengthCurve.csv', 1, 0);
|
inlinestatic |
For use in MATLAB and Python to access the concrete class.
Example: cObj = ActiveForceLengthCurve.safeDownCast(obj)
. This is equivalent to dynamic_cast<ActiveForceLengthCurve*>(obj)
in C++.
|
inline |
Set the value of the max_norm_active_fiber_length property.
|
inline |
Set the value of the min_norm_active_fiber_length property.
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Set the value of the minimum_value property.
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Set the value of the shallow_ascending_slope property.
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Set the value of the transition_norm_fiber_length property.
void OpenSim::ActiveForceLengthCurve::setActiveFiberLengths | ( | double | minActiveNormFiberLength, |
double | transitionNormFiberLength, | ||
double | maxActiveNormFiberLength, | ||
double | shallowAscendingSlope | ||
) |
minActiveNormFiberLength | The normalized fiber length where the steep ascending limb of the active-force-length curve transitions to the minimum value and has first and second derivatives of 0. |
transitionNormFiberLength | The normalized fiber length where the steep ascending limb transitions to the shallow ascending limb. |
maxActiveNormFiberLength | The normalized fiber length where the descending limb transitions to the minimum value and has first and second derivatives of 0. |
shallowAscendingSlope | The slope of the shallow ascending limb. |
Conditions
0 < minActiveNormFiberLength < transitionNormFiberLength < 1 < maxActiveNormFiberLength 0 <= shallowAscendingSlope < 1/(1-transitionNormFiberLength)
void OpenSim::ActiveForceLengthCurve::setMinValue | ( | double | minimumValue | ) |
minimumValue | The minimum value of the active-force-length curve. If you are using an equilibrium model, this value must be greater than 0, as a value of 0 will cause a singularity in the muscle dynamic equations. |
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Get a writable reference to the max_norm_active_fiber_length property.
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Get a writable reference to the min_norm_active_fiber_length property.
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Get a writable reference to the minimum_value property.
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Get a writable reference to the shallow_ascending_slope property.
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Get a writable reference to the transition_norm_fiber_length property.
double OpenSim::ActiveForceLengthCurve::max_norm_active_fiber_length |
"Normalized fiber length where the descending limb ends"
This property appears in XML files under the tag <max_norm_active_fiber_length>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::ActiveForceLengthCurve::min_norm_active_fiber_length |
"Normalized fiber length where the steep ascending limb starts"
This property appears in XML files under the tag <min_norm_active_fiber_length>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::ActiveForceLengthCurve::minimum_value |
"Minimum value of the active-force-length curve"
This property appears in XML files under the tag <minimum_value>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::ActiveForceLengthCurve::shallow_ascending_slope |
"Slope of the shallow ascending limb"
This property appears in XML files under the tag <shallow_ascending_slope>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::ActiveForceLengthCurve::transition_norm_fiber_length |
"Normalized fiber length where the steep ascending limb transitions to the shallow ascending limb"
This property appears in XML files under the tag <transition_norm_fiber_length>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.