SimTKmolmodel.h

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00001 #ifndef SimTK_MOLMODEL_SimTKMOLMODEL_H_
00002 #define SimTK_MOLMODEL_SimTKMOLMODEL_H_
00003 
00004 /* -------------------------------------------------------------------------- *
00005  *                      SimTK Core: SimTK Molmodel                            *
00006  * -------------------------------------------------------------------------- *
00007  * This is part of the SimTK Core biosimulation toolkit originating from      *
00008  * Simbios, the NIH National Center for Physics-Based Simulation of           *
00009  * Biological Structures at Stanford, funded under the NIH Roadmap for        *
00010  * Medical Research, grant U54 GM072970. See https://simtk.org.               *
00011  *                                                                            *
00012  * Portions copyright (c) 2007-9 Stanford University and the Authors.         *
00013  * Authors: Christopher Bruns                                                 *
00014  * Contributors: Michael Sherman, Peter Eastman, Randy Radmer,                * 
00015  *               Mark Friedrichs                                              *
00016  *                                                                            *
00017  * Permission is hereby granted, free of charge, to any person obtaining a    *
00018  * copy of this software and associated documentation files (the "Software"), *
00019  * to deal in the Software without restriction, including without limitation  *
00020  * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
00021  * and/or sell copies of the Software, and to permit persons to whom the      *
00022  * Software is furnished to do so, subject to the following conditions:       *
00023  *                                                                            *
00024  * The above copyright notice and this permission notice shall be included in *
00025  * all copies or substantial portions of the Software.                        *
00026  *                                                                            *
00027  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
00028  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
00029  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
00030  * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
00031  * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
00032  * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
00033  * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
00034  * -------------------------------------------------------------------------- *
00035  */
00036 
00078 #include "SimTKsimbody.h"
00079 #include "molmodel/internal/units.h"
00080 #include "molmodel/internal/bondGeometry.h"
00081 #include "molmodel/internal/Element.h"
00082 #include "molmodel/internal/AtomSubsystem.h"
00083 #include "molmodel/internal/Biotype.h"
00084 #include "molmodel/internal/Compound.h"
00085 #include "molmodel/internal/Protein.h"
00086 #include "molmodel/internal/RNA.h"
00087 #include "molmodel/internal/Ions.h"
00088 #include "molmodel/internal/DuMMForceFieldSubsystem.h"
00089 #include "molmodel/internal/MolecularMechanicsSystem.h"
00090 #include "molmodel/internal/CompoundSystem.h"
00091 #include "molmodel/internal/PDBReader.h"
00092 #include "molmodel/internal/Pdb.h"
00093 #include "molmodel/internal/Superpose.h"
00094 #include "molmodel/internal/PeriodicPdbWriter.h"
00095 #include "molmodel/internal/VanderWallSphere.h"
00096 #include "molmodel/internal/RiboseMobilizer.h"
00097 #include "molmodel/internal/PeriodicVmdReporter.h"
00098 #include "molmodel/internal/VelocityRescalingThermostat.h"
00099 #include "molmodel/internal/NoseHooverThermostat.h"
00100 #include "molmodel/internal/MassCenterMotionRemover.h"
00101 #include "molmodel/internal/CompoundModeler.h"
00102 
00103 #endif // SimTK_MOLMODEL_SimTKMOLMODEL_H_