Pdb.h File Reference

#include "SimTKsimbody.h"
#include <cctype>
#include "molmodel/internal/Compound.h"
#include <map>

Go to the source code of this file.

Classes
class	PdbResidueId
	Composite key for residue within a chain, composed of residue number and insertion code. More...
class	UndefinedPdbChainId
class	DuplicatePdbResidue
class	UndefinedAminoAcidResidue
class	PdbAtomLocation
	Location information for a PdbAtom, corresponding to one altLoc for a PdbAtom. More...
class	PdbAtom
	One atom, which may have more than one location, in the case of static or dynamic disorder in an X-ray structure. More...
class	PdbResidue
	One residue in a protein or nucleic acid, or a single molecule in the case of non-polymer structures. More...
class	PdbChain
	One molecule in a PDB structure. More...
class	PdbModel
	PDB structure containing one or more molecules (chains), corresponding to one member of an NMR ensemble of alternate structures, or to one frame of a molecular dynamics simulation. More...
class	PdbStructure
	Complete PDB file, possibly including multiple MODELS, in the case of NMR structures or molecular dynamics trajectories. More...
Namespaces
namespace	SimTK
	This is the top-level SimTK namespace into which all SimTK names are placed to avoid collision with other symbols.
namespace	SimTK::Pdb
namespace	SimTK::Exception
Functions
	SimTK_DEFINE_UNIQUE_INDEX_TYPE (AtomIndex)
	SimTK_DEFINE_UNIQUE_INDEX_TYPE (ResidueIndex)
	SimTK_DEFINE_UNIQUE_INDEX_TYPE (ChainIndex)
	SimTK_DEFINE_UNIQUE_INDEX_TYPE (ModelIndex)
std::ostream &	operator<< (std::ostream &os, const SimTK::PdbModel &pdbModel)
std::ostream &	operator<< (std::ostream &os, const SimTK::PdbStructure &pdbStructure)

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Function Documentation

std::ostream& operator<<	(	std::ostream &	os,
		const SimTK::PdbStructure &	pdbStructure
	)

std::ostream& operator<<	(	std::ostream &	os,
		const SimTK::PdbModel &	pdbModel
	)