1. Fixed a bug in ConvertProjectToHDF that prevented MSMBuilder from seeing multiple XTC files in a single directory. 2. Fixed carriage return issues in UpdateProjectToHDF 3. Fixed minor bugs in Project class. 4. If Project cannot find its PDB, it also will look in the current directory. This helps when the absolute path of a Project changes. 5. Unit tests. 6. Removed unnecessary files, reducing the package size to 10MB.