Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

992 projects
541040 downloads
67147 members
Join Us

Trending Projects

Image not available

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To provide free access to three-dimensional finite element representations of the knee joint 2) Open development of knee models for collaborative testing and use
Downloads last week: 67
Total followers: 23
New followers: 1
Total downloads: 11,326
Image not available

OpenMM

OpenMM includes everything one needs to run modern molecular simulations. It is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent GPUs.
Downloads last week: 399
Forum posts last week: 10
Total followers: 40
Total downloads: 104,403
Image not available

Efficient Methods for Multi-Domain Biomechanical Simulations

(1) To develop generic algorithms to generate computationally efficient surrogate tissue mechanics models by adaptive sampling of finite element models. (2) To simulate human gait using a musculoskeletal dynamics model coupled to a foot model.
Downloads last week: 20
Image not available

Lee-Son's Toolbox: a Toolbox that Converts VICON Mocap Data into OpenSim Inputs

　 Provide an easy and fast way to convert VICON motion capture data into OpenSim inputs
Downloads last week: 14
Total downloads: 3,200
Image not available

CT-scan based extended dynamic foot model

Provide extended biomechanical model of the foot-ankle complex, for intended use in motion analysis
New followers: 1
Image not available

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, Mycoplasma genitalium.
Downloads last week: 77
Total downloads: 16,289
Image not available

A musculoskeletal model for simulations that involve high hip and knee flexion

The goal of this project was to developed a refined musculoskeletal model capable of simulating movements that involve substantial hip and knee flexion (e.g. sprinting and cycling). The model is based on the model published by Rajagopal et al., (2016). Please cite the following paper, "Lai, A.K.M, Arnold, A.S., Wakeling, J.M. (2017) Why are antagonist muscles co-activated in my simulation? A musculoskeletal model for analysing human locomotor task. Annals of Biomedical Engineering.
Downloads last week: 28
New followers: 2
Image not available

2007BioE15 Bruns

Submit materials for class
Total followers: 22
New followers: 1
Image not available

OpenMM Zephyr

OpenMM Zephyr provides a visual application for running GPU-accelerated molecular simulations.
Downloads last week: 19
Total downloads: 8,683
Image not available

Winding Filament Muscle Model

The goal of this project is to implement a model of the Winding Filament Hypothesis of muscle contraction (Nishikawa, 2012) for use in OpenSim. The Winding Filament Hypothesis states that upon calcium influx into the muscle sarcomere, titin binds to and w
Forum posts last week: 1
Image not available

IMAG/MSM Biomechanics Working Group (Demo)

Part of the Interagency Modeling and Analysis Group (IMAG) Multiscale Modeling (MSM) Consortium, this working group seeks to advance the use of MSM within biomechanics.
New followers: 1
Image not available

OpenSim

Provide easy-to-use, extensible software for modeling, simulating, controlling, and analyzing the neuromusculoskeletal system.
Downloads last week: 648
Forum posts last week: 26
Total followers: 154
New followers: 1
Total downloads: 191,477
Image not available

DeepCell: Deep convolutional neural networks for image segmentation

Provide source code for deep learning based image segmentation
Downloads last week: 37
Total downloads: 1,484
Image not available

Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with OpenSim, for the estimation of the human lower extremity muscle and joint dynamics.
Total followers: 24
New followers: 1
Total downloads: 1,139
Image not available

Convert .c3d and .csv files to OpenSim files without any program but MatLab

Convert experimental biomechanical data into OpenSim input files without the need of any other software but MatLab©. Persons with little or no knowledge of computation programing can use this routine to
Downloads last week: 22
Total downloads: 1,177

By Category

Biological applications
Biocomputational focus

Communities

Jobs

Two Assistant Professor Positions

Kinesiology at UT Austin Sep 27, 2017
The University of Texas at Austin, Department of Kinesiology & Health Education is seeking applications from outstanding academic research scientists for two (2) tenure-track Assistant Professor positions in the Exercise Science program.

Postdoc position in computational modeling

Uppsala University Sep 9, 2017
We invite applications for 2 computational modelling postdoctoral appointments of minimum two years each (with the possibility of extension) in the Vascular Biology Unit of the Department of Immunology, Genetics and Pathology, Uppsala University, Sweden.

Software Engineer (Protein Design, Structure Bioinformatics)

DNASTAR, Inc. Aug 28, 2017
The successful candidate will collaborate in the research, development, and scientific validation of new modeling and simulation techniques for membrane proteins as well as the commercialization of software workflows with these tools.

See all job openings...

News

Iliotibial Band Models Uploaded

Muscle-Joint Contact Force Model Oct 14, 2017
Image not availablePreliminary models of Iliotibial Band and Lateral Femoral Epicondyle contact force have been uploaded!

Share Your Models for Teaching Via New Community Group

SimTK Website Oct 11, 2017
Image not availableThe newest community on SimTK is the IMAG-MSM Public Dissemination & Education Working Group (https://simtk.org/category/communityPage.php?cat=1005&sort=date&page=0&srch=&).

Webinar on why antagonists are activated in hip and knee flexion simulations

OpenSim Sep 23, 2017
Image not availableWe invite you to join us for a webinar featuring Adrian Lai from Simon Fraser University and Allison Arnold from Harvard University to learn practical tips for simulating and analyzing tasks with large hip and knee flexion.

SimVascular New Release

SimVascular: Cardiovascular Modeling and Simulation Sep 23, 2017
Image not availablePlease visit our downloads page to access the new August 2017 SimVascular release for mac, windows and linux!

Webinar on understanding how exoskeletons affect muscle-tendon mechanics during walking

OpenSim Sep 9, 2017
Image not availableWe invite you to join us for a webinar featuring Rachel Jackson from Carnegie Mellon and Stanford University to learn about using EMG-driven simulations and muscle-level energetic estimates to understand muscle-tendon function with application of an ankle-exoskeleton torque.

SimTK is maintained through Grant R01 GM107340 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Our Pledge and Your Responsibility

  About   Join
Version 2.0.18. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 5.3.2.
Feedback