OpenMM
An open-source toolkit for molecular simulation with extreme flexibility through custom forces and integrators and extreme performance through GPU acceleration... Learn more
Mycoplasma genitalium Whole-Cell Model
A detailed computational model of the entire life cycle of the bacterium Mycoplasma genitalium... Learn more
OpenSim
State-of-the-art modeling and simulation software for advancing our understanding of movement and designing improved treatments for movement abnormalities... Learn more
SimVascular
Providing a complete pipeline for patient-specific modeling from medical image data to cardiovascular blood flow simulation and analysis... Learn more
FEATURE
Modeling and finding functional domains in proteins by analyzing the structures of functionally similar proteins using supervised machine learning algorithms... Learn more
Trending Projects
Modeling, Evaluation, and Control Optimization of Exosuit with OpenSim
- Gives an example of how to use OpenSim as ananalysis tool of wearable device - Provide
example simulation models that is easy to use and
modify
Downloads last week: 63
SimVascular: Cardiovascular Modeling and Simulation
Provides a platform for patient-specificcardiovascular modeling and simulation.
Downloads last week: 89
Forum posts last week: 12
Total followers: 72
Total downloads: 26,475
OpenMM Zephyr
OpenMM Zephyr provides a visual application forrunning GPU-accelerated molecular simulations.
Downloads last week: 381
Total downloads: 21,449
Integrated Flux Balance Analysis Model of Escherichia coli
Provides MATLAB scripts for simulating metabolismby an integrated flux balance analysis / boolean
regulatory / ODE kinetic approach.
Downloads last week: 54
Adun: high performance productivity molecular simulations code
Provide access to easy development of new code inthe form of plugins for different purposes, that
take profit of the advanced structure of the Adun
framework
Downloads last week: 51
Modelling loads in OpenSim to simulate two-handed lifting
The goal of the present work is to compare fivemodelling approaches to model the interaction
between external loads and hands. The introduced
modelling approaches possess various complexity
and are tested for various two-handed lifting
tasks.
New followers: 1
Vertical Jump Case Study Mark Ford
Analysis (estimation of forces, moments applied)of a knee joint when performing a vertical jump. I
am only looking into the take off phase of the
jump.
Forum posts last week: 1
Full Body Model for use in Dynamic Simulations of Human Gait
Full body musculoskeletal model withmuscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Total followers: 28
Total downloads: 7,583
Kinematic Tracking of Wrist Carpal Bones Using 4D MRI
In this project, heavily under-sampled andfat-saturated 3D Cartesian MRI acquisition were
used to capture temporal frames of the
unconstrained moving wrist of 5 healthy subjects.
New download files: 1
Grand Challenge Competition to Predict In Vivo Knee Loads
Provide a comprehensive data set with associatedmodels that will enable researchers to validate
musculoskeletal model estimates of muscle and
joint contact forces in the knee.
Downloads last week: 68
Total downloads: 21,268
The Musculoskeletal Atlas Project
Provides an easy-to-use application forvisualising imaging data, segmenting images,
creating geometric meshes, and exporting OpenSim
and FE models.
Total followers: 23
SCONE: Open Source Software for Predictive Simulation of Biological Motion
SCONE is open source software for predictivesimulation of biological motion. It optimizes
muscle excitation patterns and motion trajectories
according to high-level objectives, such as
walking speed and energy efficiency. Visit the
SCONE
homepage for more information, or check
what's new in the latest version.
Forum posts last week: 3
Total followers: 24
Upper Extremity Dynamic Model
Provides the files associated with a dynamic modelof the upper limb for use in SIMM or OpenSim.
Total followers: 34
Total downloads: 6,057
OpenMM
OpenMM includes everything one needs to run modernmolecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 1,324
Forum posts last week: 3
Total followers: 64
Total downloads: 475,246
By Category
Biological applications
Communities
Jobs
Bioinformatician
Stockholm University
Jan 4, 2022
Jan 4, 2022
This position will evaluate, document, and improve bioinformatics teaching techniques, and in particular create a Massively Open Online Course (MOOC) in Bioinformatics. The work should be published in a pedagogical or suitable subject journal. There is also a possibility to give selected lectures in MS-level Bioinformatics within the Bioinformatician’s areas of expertise
Biomechanical Scientist
CFD Research
Dec 13, 2021
Dec 13, 2021
This position will focus on developing and maintaining computational physic engines, specifically in the context of musculoskeletal simulations for use in applications related to personal health.
Postdoc fellowship
University of Twente
Oct 18, 2021
Oct 18, 2021
The Neuromechanical Modeling and Engineering Lab is seeking for an outstanding post-doctoral fellow to work within the ERC project INTERACT. You will join an international team working on a high-gain/high-risk project at the frontiers of neurophysiology, biomechanics and robotics.
News
Workshop at SB3C Conference June 13, 2021
The Reference Model for COVID-19 - The First Multi-Scale Ensemble Disease Model
The Reference Model for Disease Progression
Jun 6, 2021
Dog model
A three-dimensional musculoskeletal model of the dog
May 31, 2021
New package added: MMB 3.14 for Windows
MMB (MacroMoleculeBuilder)
Apr 7, 2021
Apply for Digital Human Modeling Postdoctoral Fellowships at Stanford University
OpenSim
Jan 23, 2021