OpenMM
An open-source toolkit for molecular simulation with extreme flexibility through custom forces and integrators and extreme performance through GPU acceleration... Learn more
Mycoplasma genitalium Whole-Cell Model
A detailed computational model of the entire life cycle of the bacterium Mycoplasma genitalium... Learn more
OpenSim
State-of-the-art modeling and simulation software for advancing our understanding of movement and designing improved treatments for movement abnormalities... Learn more
SimVascular
Providing a complete pipeline for patient-specific modeling from medical image data to cardiovascular blood flow simulation and analysis... Learn more
FEATURE
Modeling and finding functional domains in proteins by analyzing the structures of functionally similar proteins using supervised machine learning algorithms... Learn more
Trending Projects
Model of the Scapulothoracic Joint
Provide an OpenSim Joint model that enables a more accurate representation of scapula mechanics in musculoskeletal simulations.Downloads last week: 22
Total downloads: 2,018
Snorkel
Snorkel is an open-source system that generates training data for information extraction systems, also known as predictive systems.Downloads last week: 72
Total downloads: 1,833
Muscle contributions to mass center accelerations over a range of running speeds
Repository of experimental data (i.e., motion capture, EMG, GRFs), subject-specific models, and muscle-driven simulation results of 10 male subject running across a range of speeds: 2 m/s, 3 m/s, 4 m/s, and 5 m/s.Downloads last week: 38
New followers: 1
SWEETLEAD: A cheminformatics database of medicines, drugs, and herbal isolates.
Individual chemical databases sometimes contain incorrect structural information about drugs. We seek to address this problem by providing accurate structures for use in drug discovery efforts and cheminformatics analysis.Forum posts last week: 1
OpenSim
Provide easy-to-use, extensible software for modeling, simulating, controlling, and analyzing the neuromusculoskeletal system.Downloads last week: 800
Forum posts last week: 73
Total followers: 169
Total downloads: 219,332
Grand Challenge Competition to Predict In Vivo Knee Loads
Provide a comprehensive data set with associated models that will enable researchers to validate musculoskeletal model estimates of muscle and joint contact forces in the knee.Downloads last week: 73
Total downloads: 10,992
Are subject-specific musculoskeletal models robust to parameter identification?
Analyze how robust are image-based musculoskeletal models to the uncertainties in parameter identification, and provide software for subject-specific model creation (NMSBuilder) and probabilistic simulations of movement.New followers: 1
Total downloads: 1,333
An OpenSim plugin to minimize joint reaction forces and muscle activations
To provide a simple tool for estimating muscle recruitment based on joint loading and muscle activity.Downloads last week: 23
Studying Anterior Cruciate Ligament Strains in Young Female Athletes
The model and data files provide a guide to creating, simulating, and visualizing 3D Anterior Cruciate Ligament and other knee biomechanics while stop jumps are performed.New followers: 1
Whole-Cell Computational Model of Mycoplasma genitalium
This project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, Mycoplasma genitalium.Downloads last week: 70
Total downloads: 18,276
Muscle-actuated Simulation of Human Running
The purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running.Downloads last week: 57
Total followers: 24
Total downloads: 10,668
SimVascular: Cardiovascular Modeling and Simulation
Provides a platform for patient-specific cardiovascular modeling and simulation.Downloads last week: 80
Forum posts last week: 10
Total followers: 50
Total downloads: 9,032
Role of plantarflexors of the ankle
The purpose of this tutorial is to explain how I used OpenSim to understand the role of the ankle plantarflexors in human gait.New followers: 1
Batch processing to create marker (.trc) files using Scilab
I provide a script code (Scilab) that creates marker (.trc) files from .csv (Comma Separated Values) files.New download files: 1
New members: 1
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Jobs
Postdoc for Computational Biology Research
Indiana University April 16, 2018
Two open post-doc positions in computational biology and computational physics research at Indiana University Department of Intelligent Systems Engineering
News
Iliotibial Band Models Uploaded
Muscle-Joint Contact Force Model Oct 14, 2017
Share Your Models for Teaching Via New Community Group
SimTK Website Oct 11, 2017
Webinar on why antagonists are activated in hip and knee flexion simulations
OpenSim Sep 23, 2017
SimVascular New Release
SimVascular: Cardiovascular Modeling and Simulation Sep 23, 2017
Webinar on understanding how exoskeletons affect muscle-tendon mechanics during walking
OpenSim Sep 9, 2017