Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1598 projects
1949615 downloads
121560 members
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Trending Projects

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Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To
provide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 288
Total followers: 40
Total downloads: 91,109
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Predicting allosteric communication in myosin via a conserved residue pathway

  1. Better understand the allosteric
    communication     pathway used by Myosin to
    convert ATP hydrolysis energy into movement along
    actin.
  2. Provide researchers with an
    application and code for finding protein
    allosteric pathways.

Downloads last week: 371
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Full Body Model for use in Dynamic Simulations of Human Gait

Full body musculoskeletal model with
muscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Total followers: 30
Total downloads: 8,722
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Interpolation between ferrochelatase crystal structures

Interpolation between two (identical sequence)
crystal structures of the human enzyme
ferrochelatase. The main structural differences
are centered around a pi-helix that has been
proposed to be important for the enzyme to acquire
the substrate iron and de
Forum posts last week: 1
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Force Field X

Force Field X is a group of open source (GPL v.
3), platform independent (Java Runtime
Environment) modules for molecular biophysics.
Downloads last week: 50
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OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 278
Total downloads: 32,066
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OpenSim Advanced User and Developer Workshop, August 15-17, 2011

Provide handouts, videos, and other material from
the OpenSim Advanced Users workshop.
New followers: 1
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Lifting Full-Body Model

The existing full-body-lumbar-spine (FBLS) model
was adapted and validated for lifting motions to
produce the lifting full-body (LFB) model to
estimate spinal loads during lifting. The model
was validated through comparisons with
experimental electromyogr
Forum posts last week: 1
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Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Total followers: 36
Total downloads: 6,929
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Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how
muscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Total followers: 36
Total downloads: 20,873
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 102
Forum posts last week: 29
New download files: 1
Total followers: 75
New followers: 1
Total downloads: 29,766
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OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 3,009
Forum posts last week: 8
Total followers: 283
New followers: 1
Total downloads: 574,273
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Reproducibility in simulation­-based prediction of natural knee mechanics

This project aims for understanding the influence
of modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 105
Total downloads: 13,216
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Tibial forces in independently ambulatory children with spina bifida

Bone strength data, kinematic and kinetic
overground walking data, and simulation results
from 16 independently ambulatory children with
spina bifida and 16 age- and sex-matched children
with typical development.
Forum posts last week: 1
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2007BioE15 Bruns

Submit materials for class
Total followers: 66

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Postdoctoral Scholar - Human Performance Alliance Innovation Hub

University of Oregon
Aug 19, 2022
A postdoctoral research position is available at the Bowerman Sports Science Center within the new Hayward Field athletics facility at the University of Oregon, Eugene, OR. This position will join a vibrant team of research staff, graduate students, postdoctoral researchers and faculty in applied physiology and biomechanics, all working in association with the Wu Tsai Human Performance Alliance Innovation Hub at the University of Oregon. Additionally, the position will involve frequent collaboration with Bioengineering faculty and research staff in the Phil and Penny Knight Campus for Accelerating Scientific Impact.

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News

Webinar: Energetics and Big Data Approach Explain Ecological Running Speeds

OpenSim Aug 16, 2022
Image not availableWe are pleased to announce our upcoming webinar by Dr. Jess Selinger from Queens University.

SimVascular Workshop at SB3C 2022 June 23rd

SimVascular: Cardiovascular Modeling and Simulation May 26, 2022
Image not availableWe are excited to be hosting our annual SimVascular workshop and user training at the SB3C conference June 23rd, 2022.

Webinar: Estimating Energy Expenditure during Exercise Using Wearable Sensors

OpenSim Apr 25, 2022
Image not availableWe are pleased to announce our upcoming webinar with Patrick Slade from Stanford University.

Workshop at SB3C Conference June 13, 2021

SimVascular: Cardiovascular Modeling and Simulation Jun 7, 2021
Image not availablePlease join us for a SimVascular workshop on Sunday June 13th, 2021 at 10am PST.

The Reference Model for COVID-19 - The First Multi-Scale Ensemble Disease Model

The Reference Model for Disease Progression Jun 6, 2021
Image not available The Reference Model for disease progression attempts to explain COVID-19 for US states and territories by merging multiple models in an ensemble.

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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