Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1113 projects
709493 downloads
76810 members
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Trending Projects

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Grand Challenge Competition to Predict In Vivo Knee Loads

Provide a comprehensive data set with associated
models that will enable researchers to validate
musculoskeletal model estimates of muscle and
joint contact forces in the knee.
Downloads last week: 23
New followers: 1
Total downloads: 12,526
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Simbody: Multibody Physics API

Simbody is useful for internal coordinate and
coarse grained molecule modeling, large scale
mechanical models like skeletons, and anything
else that can be modeled as bodies interconnected
by joints, acted upon by forces, and restricted by
constraints.
Forum posts last week: 4
Total downloads: 4,036
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2007BioE15 Bruns

Submit materials for class
Total followers: 39
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 102
Forum posts last week: 24
Total followers: 54
New members: 15
Total downloads: 11,640
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Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB

This project overcomes neuromusculoskeletal
systems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 29
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Specimen-Specific Models of the Healthy Knee

Sophisticated, patient-specific, models of the
knee for research in rehabilitation, physical
therapy, orthopedic surgery, implant design, and
sports performance.
New followers: 1
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Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how
muscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Downloads last week: 40
Total followers: 26
Total downloads: 12,067
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Predicting Cell Deformation from Body Level Mechanical Loads

1) To develop computational models of the knee
joint at multiple resolutions 2) To obtain cell
deformations in cartilage, ligaments and menisci
as a function of knee loading 3) To validate
multiscale knee simulations
Downloads last week: 22
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dentification of inhibitors for the E.coli meningitis virulence factor IbeA

This project is to use combined biological assays
and computational methods to design and identify
the inhibitors for bacterial meningitis.
Forum posts last week: 1
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Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 33
Total downloads: 3,946
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SimCP: a platform to simulate gait performance after intervention in CP children

The goal of SimCP is to create an OpenSim-based
simulation platform to predict gait performance
following orthopedic intervention in children with
cerebral palsy
New followers: 1
New members: 1
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Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Downloads last week: 22
Total followers: 20
Total downloads: 3,190
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AD4D-Study: CFD / 4D Flow in Aortic dissection

In vitro / in silico / in vivo comparison of flow
and wall shear stress changes in aortic dissection
and surgical treated aortas with a focus on 4D
flow at 3T.
Forum posts last week: 1
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MITK-GEM: Software pipeline to GEnerate Models from images

Provides a image analysis application with GUI to
generate finite element models from medical
images.
New followers: 1
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Extendable OpenSim-Matlab Infrastructure Using Class Oriented C++ Mex Interface

This project aims to provide an easy to used
extendable C++ interface between OpenSim and
Matlab.
Forum posts last week: 2
New followers: 1

By Category

Biological applications
Biocomputational focus

Communities

Jobs

Postdoctoral Fellow

Washington State University
November 12, 2018
A one-year postdoctoral position is available immediately in the area of neck musculoskeletal modeling. The goal of the work is to examine neck muscle forces and cervical disc loads in static and dynamic conditions.

Researcher Position

University of Tübingen
October 29, 2018
A funded researcher position for 6 to 12 Months in the project "Multi-level modelling of neuro-muscular disorders at the wrist" is offered at the University of Tübingen.

Faculty Position

Columbia University
October 26, 2018
The Department of Mechanical Engineering welcomes applications for a faculty position at open rank. We are searching broadly in ALL AREAS of mechanical engineering, and encourage candidates with an interest in the school-wide initiatives that relate to engineering and medicine, autonomous systems, and sustainability.

Assistant, Associate Professor

Stanford University
October 26, 2018
The Department of Mechanical Engineering at Stanford University invites applications for a tenure-track faculty appointment at the junior level (Assistant or untenured Associate Professor).

Neuroengineering Faculty Position

The University of Southern California
October 26, 2018
The University of Southern California, one of the nation’s top research universities, invites applications for tenure-track positions in the Department of Biomedical Engineering in the Viterbi School of Engineering.

See all job openings...

News

First OpenArm 3D muscle deformation data set released!

OpenArm: Volumetric Models of Force- and Kinematic-Induced Muscle Deformation Nov 29, 2018
Image not availableThe first generation of the OpenArm data set has now been ported from our lab website to the SimTK community!

Webinar: Interfacing Musculoskeletal and Finite Element Models to Study Bone Structure and Adaptation

OpenSim Nov 28, 2018
Image not availableWe invite you to join us for a webinar featuring Luca Modenese and Andrew Phillips from Imperial College London.

Muscle Redundancy Solver: new release

Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem Nov 9, 2018
Image not availableA new open-source version of the muscle redundancy solver is out: https://simtk.org/projects/optcntrlmuscle

Webinar on Jumping Into OpenSim 4.0

OpenSim Nov 8, 2018
Image not availableWe invite you to join us for a webinar featuring Ayman Habib, Jennifer Hicks, Tom Uchida, and Ajay Seth from Stanford University.

Webinar on SimCP - A Simulation Platform to Predict Gait Performance Following Orthopedic Interventions in Children with Cerebral Palsy

OpenSim Sep 6, 2018
Image not availableWe invite you to join us for a webinar featuring Ilse Jonkers and Friedl De Groote from the Human Movement Biomechanics Research Group at KU Leuven in Belgium.

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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