Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with
OpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 40

Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB

This project overcomes neuromusculoskeletal
systems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 66
New followers: 1

OpenSim Moco

OpenSim Moco solves optimal control problems with
musculoskeletal models defined in OpenSim, using
direct collocation.
Forum posts last week: 14

2007BioE15 Bruns

Submit materials for class
Total followers: 67

Predicting allosteric communication in myosin via a conserved residue pathway

1. Better understand the allosteric
   communication pathway used by Myosin to
   convert ATP hydrolysis energy into movement along
   actin.
2. Provide researchers with an
   application and code for finding protein
   allosteric pathways.

Downloads last week: 60

OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 3,211
Total followers: 65
Total downloads: 558,026

SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 209
Forum posts last week: 13
Total followers: 75
Total downloads: 30,518

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 376
Total downloads: 119,547

OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 3,453
Forum posts last week: 19
Total followers: 285
New followers: 1
Total downloads: 593,889

Reproducibility in simulation­-based prediction of natural knee mechanics

This project aims for understanding the influence
of modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 108
Total downloads: 13,855

Static Optimization Validation of Changes in Peak Medial Knee Contact Forces

Accompanying dataset for our manuscript, "Can
static optimization detect changes in peak medial
knee contact forces induced by gait
modifications?"
Forum posts last week: 1

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To
provide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 244
Total followers: 40
Total downloads: 93,646

OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 1,019
Total downloads: 35,513

Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 139
Total downloads: 27,298

Matlab-Opensim Interfaces

Provides tools for using different aspects of
Opensim within the Matlab environment, including
command line pipelines as well as accessing the
Opensim API directly. The main functionality
has now been included as part of Opensim 3.0 with
improved functionality (and will become more
obsolete with Opensim 4.0). Please see the
developer wiki for more information. Therefore
this is being kept only as an archive, and users
should see the documentation on interfacing Matlab
with Opensim on the Opensim website
(http://simtk-confluence.stanford.edu:8080/display
/OpenSim/Scripting+with+Matlab). As such the
forums etc will not be monitored.
Total followers: 24
Total downloads: 7,818