Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1227 projects
893269 downloads
85446 members
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Trending Projects

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Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with
OpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 31
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Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Total followers: 23
Total downloads: 3,749
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SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 55
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OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,141
Forum posts last week: 19
Total followers: 220
New followers: 2
Total downloads: 292,745
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C2A (Coarse to Atomic)

A Knowledge-Based Method for Instantiating Full
Atomic Detail into Coarse Grain RNA Structure
Models
New followers: 1
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Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To
provide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 517
Forum posts last week: 4
Total followers: 33
Total downloads: 31,422
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Musculoskeletal Model of the Lumbar Spine

Make publicly available a musculoskeletal model of
the lumbar spine to be used for modeling lumbar
spine kinematics as well as for further
improvement by the biomechanics community.
Downloads last week: 61
Total downloads: 9,827
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sbmOpenMM: Structure-based model library for protein simulations in OpenMM

sbmOpenMM is a Python library to run protein
structure-based model (SBM) simulations using
OpenMM toolkit. The library offers flexibility for
creating SBM force fields that can be customised
to capture different aspects of protein SBM
potential energy exp
New followers: 1
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2007BioE15 Bruns

Submit materials for class
Total followers: 45
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Algorithmic differentiation for trajectory optimization problems with OpenSim

Code to solve trajectory optimization problems
with OpenSim, direct collocation, and algorithmic
differentiation .
New members: 3
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Dynamic Arm Simulator

Provides a real-time, dynamic simulation of arm
movement.
Total followers: 24
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A musculoskeletal model for simulations that involve high hip and knee flexion

The goal of this project was to developed a
refined musculoskeletal model capable of
simulating movements that involve substantial hip
and knee flexion (e.g. sprinting and cycling). The
model is based on the model published by Rajagopal
et al., (2016). Please cite the following
paper, "Lai, A.K.M, Arnold, A.S., Wakeling, J.M.
(2017) Why are antagonist muscles co-activated in
my simulation? A musculoskeletal model for
analysing human locomotor task. Annals of
Biomedical Engineering.
Downloads last week: 32
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Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB

This project overcomes neuromusculoskeletal
systems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 41
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 83
Forum posts last week: 10
Total followers: 63
New followers: 1
Total downloads: 15,557
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OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 3,770
Total followers: 55
New followers: 2
Total downloads: 212,129

By Category

Biological applications
Biocomputational focus

Communities

Jobs

C++ Software Developer: Computational Modeling and Simulation

Kitware
October 9, 2019
Kitware is developing open source computational tools and applications for modeling and simulation of open and minimally invasive surgical procedures during cardiovascular interventions, neurosurgery, nasal surgery, orthognathic surgery and orthopedic surgery. If hired, the R&D engineer will be working on open source computational simulation toolkits that Kitware maintains including iMSTK, Pulse, CMB and VTK and developing applications using these toolkits.

Tenure-Track Assistant Professor in Biomechanics

University of Massachusetts, Amherst
October 7, 2019
The Department of Kinesiology at the University of Massachusetts Amherst announces a new tenure-track faculty position in the area of Biomechanics. An individual with a PhD or equivalent degree in kinesiology or a closely related field with an outstanding research program in the area of biomechanics is sought.

Tenure-Track Faculty Positions (2) Assistant/Associate Professor in Movement Neuroscience

University of Massachusetts, Amherst
October 7, 2019
The Department of Kinesiology at the University of Massachusetts Amherst announces two tenure-track faculty positions in the area of Movement Neuroscience. Individuals with a PhD or equivalent degree in kinesiology or a closely related field with an outstanding research program in the area of movement neuroscience are sought.

See all job openings...

News

Webinar: Predictive Simulation of Biological Motion using SCONE

OpenSim Oct 21, 2019
Image not availableWe invite you to join us for a webinar featuring Thomas Geijtenbeek from Delft University of Technology.

OpenArm 2.0 data set released + scheduled for presentation at EMBC Berlin!

OpenArm: Volumetric Models of Force- and Kinematic-Induced Muscle Deformation Jul 16, 2019
Image not availableThe OpenArm 2.0 muscle deformation data set has now been released to SimTK, and is scheduled for presentation at EMBC 2019 in Berlin!

SimVascular Workshop and Booth at SB3C 2019

SimVascular: Cardiovascular Modeling and Simulation Jun 21, 2019
Image not availableJoin us for a SimVascular workshop and new user training at the SB3C meeting June 25th 11:30am.

Webinar: Predictive Simulations to Study the Plantarflexors in Gait Pathologies

OpenSim May 3, 2019
Image not availableWe invite you to join us for a webinar featuring Carmichael Ong from Stanford University.

Experimental determination of 3D knee compliance

The Virtual Human Knee: ligament & articular surface mechanics Feb 6, 2019
Image not availableThe pilot experiment drawing a link between clinically-viable uniaxial laxity test and 3D knee compliance have just gone out.

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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