OpenMM
An open-source toolkit for molecular simulation with extreme flexibility through custom forces and integrators and extreme performance through GPU acceleration... Learn more
Mycoplasma genitalium Whole-Cell Model
A detailed computational model of the entire life cycle of the bacterium Mycoplasma genitalium... Learn more
OpenSim
State-of-the-art modeling and simulation software for advancing our understanding of movement and designing improved treatments for movement abnormalities... Learn more
SimVascular
Providing a complete pipeline for patient-specific modeling from medical image data to cardiovascular blood flow simulation and analysis... Learn more
FEATURE
Modeling and finding functional domains in proteins by analyzing the structures of functionally similar proteins using supervised machine learning algorithms... Learn more
Trending Projects
Predictive Simulation of Loaded and Inclined Walking
Generating robust accurate predictive simulationsof human walking in OpenSim
New followers: 1
Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB
This project overcomes neuromusculoskeletalsystems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 29
Snorkel
Snorkel is an open-source system that generatestraining data for information extraction systems,
also known as predictive systems.
Downloads last week: 33
Total downloads: 3,934
Full Body Model for use in Dynamic Simulations of Human Gait
Full body musculoskeletal model withmuscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Downloads last week: 25
Total downloads: 2,430
A musculoskeletal model for simulations that involve high hip and knee flexion
The goal of this project was to developed arefined musculoskeletal model capable of
simulating movements that involve substantial hip
and knee flexion (e.g. sprinting and cycling). The
model is based on the model published by Rajagopal
et al., (2016). Please cite the following
paper, "Lai, A.K.M, Arnold, A.S., Wakeling, J.M.
(2017) Why are antagonist muscles co-activated in
my simulation? A musculoskeletal model for
analysing human locomotor task. Annals of
Biomedical Engineering.
Downloads last week: 21
SimCP: a platform to simulate gait performance after intervention in CP children
The goal of SimCP is to create an OpenSim-basedsimulation platform to predict gait performance
following orthopedic intervention in children with
cerebral palsy
New followers: 1
New members: 1
Simulations of Crouch Gait
Simulations of individuals with cerebral palsywho walk in a crouch gait . These simulations
were used in analyses of (1) contributions to mass
center accelerations, (2) impacts of muscle
weakness, (3) magnitudes of tibiofemoral contact
forces, and (4) evaluations of ankle foot orthoses
during crouch gait. Downloads provide all
supporting files for OpenSim simulations. Please
see accompanying publications for more
information.
Downloads last week: 20
Total downloads: 3,608
Materials to build MSK models from medical images
This project aims to collect materials (guide andscripts) to guide users in creating
musculoskeletal models of the lower limb from
medical images.
Forum posts last week: 1
New download files: 1
OpenMM
OpenMM includes everything one needs to run modernmolecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 699
Forum posts last week: 18
Total followers: 49
Total downloads: 138,408
Muscle-actuated Simulation of Human Running
The purpose of this study was to determine howmuscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Downloads last week: 40
Total followers: 26
Total downloads: 12,063
SCONE
SCONE is machine learning software for predictivesimulation of human and animal motion. It
optimizes muscle excitation patterns and motion
trajectories according to high-level objectives,
such as walking speed and energy efficiency.
New followers: 1
Whole-Cell Computational Model of Mycoplasma genitalium
This project provides all code and data for thefirst "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 117
Total downloads: 20,187
SAI Application for Task-level Simulation of Robotic and Biomechanical Systems
Provide an interactive environment for task-levelsimulation and control of human and robotic
systems.
New followers: 1
Grand Challenge Competition to Predict In Vivo Knee Loads
Provide a comprehensive data set with associatedmodels that will enable researchers to validate
musculoskeletal model estimates of muscle and
joint contact forces in the knee.
Downloads last week: 23
New followers: 1
Total downloads: 12,526
By Category
Biological applications
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Jobs
Postdoctoral Fellow
Washington State University
November 12, 2018
November 12, 2018
A one-year postdoctoral position is available immediately in the area of neck musculoskeletal modeling. The goal of the work is to examine neck muscle forces and cervical disc loads in static and dynamic conditions.
Researcher Position
University of Tübingen
October 29, 2018
October 29, 2018
A funded researcher position for 6 to 12 Months in the project "Multi-level modelling of neuro-muscular disorders at the wrist" is offered at the University of Tübingen.
Faculty Position
Columbia University
October 26, 2018
October 26, 2018
The Department of Mechanical Engineering welcomes applications for a faculty position at open rank. We are searching broadly in ALL AREAS of mechanical engineering, and encourage candidates with an interest in the school-wide initiatives that relate to engineering and medicine, autonomous systems, and sustainability.
Assistant, Associate Professor
Stanford University
October 26, 2018
October 26, 2018
The Department of Mechanical Engineering at Stanford University invites applications for a tenure-track faculty appointment at the junior level (Assistant or untenured Associate Professor).
Neuroengineering Faculty Position
The University of Southern California
October 26, 2018
October 26, 2018
The University of Southern California, one of the nation’s top research universities, invites applications for tenure-track positions in the Department of Biomedical Engineering in the Viterbi School of Engineering.
News
First OpenArm 3D muscle deformation data set released!
The first generation of the OpenArm data set has now been ported from our lab website to the SimTK community!Webinar: Interfacing Musculoskeletal and Finite Element Models to Study Bone Structure and Adaptation
OpenSim Nov 28, 2018
Muscle Redundancy Solver: new release
Webinar on Jumping Into OpenSim 4.0
OpenSim Nov 8, 2018
Webinar on SimCP - A Simulation Platform to Predict Gait Performance Following Orthopedic Interventions in Children with Cerebral Palsy
OpenSim Sep 6, 2018