Trending Projects
OpenSim Moco
OpenSim Moco solves optimal control problems withmusculoskeletal models defined in OpenSim, using
direct collocation.
Forum posts last week: 11
SCONE: Open Source Software for Predictive Simulation
<imgsrc="https://scone.software/scone_window.png&
quot; alt="SCONE">SCONE is free and
open-source software for <b>predictive
simulation</b> of human and animal
motion. With SCONE, you can define and optimize
<b>neuromuscular controllers</b> to
optimally perform a specific task, according to
<b>high-level objectives</b> such as
walking speed and energy efficiency. Please
visit the <a
href="https://scone.software">SCONE
homepage</a> for more information, or check
<a
href="https://scone.software/doku.php?id=chan
ges">what's new</a> in the latest
version.
Total followers: 33
Statistical analysis of conformational ensembles
Provide user-friendly codes and algorithms writtenusing GROMACS/CHARMM APIs for statistical analysis
of conformational ensembles
Downloads last week: 42
SimVascular: Examples and Clinical Cases
Download examples and clinical case files forcardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 42
Total downloads: 11,156
OpenCap
OpenCap is a software package to estimate 3D humanmovement dynamics from smartphone videos.
Forum posts last week: 13
Whole-Cell Computational Model of Mycoplasma genitalium
This project provides all code and data for thefirst "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 372
Total downloads: 148,151
Practical Annotation and Exchange of Virtual Anatomy
This site serves for dissemination of aeva and itsuse cases. aeva is a free and open source software
for annotation and exchange of virtual anatomy.
The use cases drive design and testing of aeva
features and demonstrate various workflows that
rely on virtual anatomy.
Downloads last week: 84
Open Knee(s): Virtual Biomechanical Representations of the Knee Joint
Open Knee(s) goals have been to provide freeaccess to three-dimensional finite element
representations of the knee joint and promote open
development of knee models for collaborative
testing and use. <B>Definitive Guide to
Project and Its Outcomes</B> Open Knee(s): A
Free and Open Source Library of Specimen-Specific
Models and Related Digital Assets for Finite
Element Analysis of the Knee Joint. Chokhandre S,
Schwartz A, Klonowski E, Landis B, Erdemir A. Ann
Biomed Eng. 2023 Jan;51(1):10-23. (<A
HREF="https://doi.org/10.1007/s10439-022-0307
4-0">https://doi.org/10.1007/s10439-022-03
074-0</A>) <B>Definitive Guide to
Open Knee(s) Data</B> Specimen specific
imaging and joint mechanical testing data for next
generation virtual knees. Chokhandre S, Neumann
EE, Nagle TF, Colbrunn RW, Flask CA, Colak C,
Halloran J, Erdemir A. Data Brief. 2021 Jan
30;35:106824. (<A
HREF="https://doi.org/10.1016/j.dib.2021.1068
24">https://doi.org/10.1016/j.dib.2021.106
824</A>) <B>Database of Open
Knee(s) Models</B> Under Downloads ->
Data Share -> View -> OKS_models and at
(<A
HREF="https://doi.org/10.18735/b0zv-n395"
;>https://doi.org/10.18735/b0zv-n395</A>)
<B>Database of Open Knee(s)
Data</B> Growing version under Downloads
-> Data Share -> View -> Open Knees Data;
permanent static version at (<A
HREF="https://doi.org/10.18735/4e78-1311"
;>https://doi.org/10.18735/4e78-1311</A>)
Downloads last week: 568
Total followers: 43
Total downloads: 118,634
Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)
Provides an easy to use toolbox, compatible withOpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Forum posts last week: 2
Total followers: 41
SimVascular: Cardiovascular Modeling and Simulation
Provides a platform for patient-specificcardiovascular modeling and simulation.
Downloads last week: 117
Forum posts last week: 23
Total followers: 77
New followers: 1
Total downloads: 38,101
Full Body Model for use in Dynamic Simulations of Human Gait
Full body musculoskeletal model withmuscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Total followers: 34
Total downloads: 10,952
Reproducibility in simulation-based prediction of natural knee mechanics
This project aims for understanding the influenceof modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 141
Total downloads: 18,945
Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB
This project overcomes neuromusculoskeletalsystems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 70
Snorkel
Snorkel is an open-source system that generatestraining data for information extraction systems,
also known as predictive systems.
Downloads last week: 185
Total downloads: 34,023
Closed loop simulation of a human-exoskeleton and kinetic and kinematic modeling
This project attempts to tackle some of thechallenges in developing an exoskeleton device
using simulation methods. in this project, the
closed loop simulation of a human exoskeleton is
performed .In this study, a simulation-based
method is presented for the designing and analysis
of the parameters of an exoskeleton and its
wearer’s kinetics and kinematics. Model-based
design software, including OpenSim and Inventor,
and mathematical software, such as MATLAB, are
integrated. This method can assist in the
modification of exoskeleton devices and allow
physiologists, and physical therapists to
generate new solutions for rehabilitation programs
using exoskeletons.
Downloads last week: 41
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Jobs
NIH-funded Post-doctoral Position
Rice Computational Neuromechanics Lab
Sep 13, 2022
Sep 13, 2022
The Rice Computational Neuromechanics Lab directed by B.J. Fregly is seeking to hire a creative and highly-motivated post-doctoral research associate, with an appointment beginning as soon as possible. We are seeking candidates who have demonstrated ability to lead and/or work collaboratively in teams composed of individuals of diverse backgrounds, skills, and perspectives.
Postdoctoral Scholar - Human Performance Alliance Innovation Hub
University of Oregon
Aug 19, 2022
Aug 19, 2022
A postdoctoral research position is available at the Bowerman Sports Science Center within the new Hayward Field athletics facility at the University of Oregon, Eugene, OR. This position will join a vibrant team of research staff, graduate students, postdoctoral researchers and faculty in applied physiology and biomechanics, all working in association with the Wu Tsai Human Performance Alliance Innovation Hub at the University of Oregon. Additionally, the position will involve frequent collaboration with Bioengineering faculty and research staff in the Phil and Penny Knight Campus for Accelerating Scientific Impact.
News
SimVascular Workshop at SB3C 2022 June 23rd
SimVascular: Cardiovascular Modeling and Simulation
May 26, 2022