Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

885 projects
412907 downloads
53949 members
Join Us

Trending Projects

Image not available

Quasi-passive Biarticular Prosthesis - including generic BK amputee model

This project is using OpenSim to design and evaluate a quasi-passive biarticular prosthesis for transtibial amputees. In the physical device, a ratchet-clutched tension spring is attached above the knee and below the ankle to actuate both the ankle an kne
Forum posts last week: 1
Image not available

Matlab-Opensim Interfaces

Provides tools for using different aspects of Opensim within the Matlab environment, including command line pipelines as well as accessing the Opensim API directly.
New followers: 1
Total downloads: 2,572
Image not available

OpenMM

OpenMM includes everything one needs to run modern molecular simulations. It is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent GPUs.
Downloads last week: 568
Forum posts last week: 20
Total followers: 24
Total downloads: 73,567
Image not available

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, Mycoplasma genitalium.
Downloads last week: 47
Total downloads: 12,255
Image not available

Full Body Model for use in Dynamic Simulations of Human Gait

Full body musculoskeletal model with muscle-actuated lower extremity and torque-actuated torso/upper extremity for use in dynamic simulations of human movement.
Downloads last week: 16
Image not available

OpenSim

Provide easy-to-use, extensible software for modeling, simulating, controlling, and analyzing the neuromusculoskeletal system.
Downloads last week: 688
Forum posts last week: 26
Total followers: 102
Total downloads: 145,390
Image not available

OpenMM Zephyr

OpenMM Zephyr provides a visual application for running GPU-accelerated molecular simulations.
Downloads last week: 23
Total downloads: 7,620
Image not available

Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running.
Downloads last week: 38
Total downloads: 7,693
Image not available

Musculoskeletal Model of the Lumbar Spine

Make publicly available a musculoskeletal model of the lumbar spine to be used for modeling lumbar spine kinematics as well as for further improvement by the biomechanics community.
Downloads last week: 14
Total downloads: 6,567
Image not available

KGS: Sampling and Characterizing Protein and RNA conformational landscapes

Software algorithms to structurally characterize protein and RNA conformational ensembles
New followers: 1
Image not available

SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific cardiovascular modeling and simulation.
Downloads last week: 70
Forum posts last week: 2
Total followers: 24
Total downloads: 5,232
Image not available

Simulated muscle fiber lengths and velocities during walking and running

Distribution of simulation results that we used to generate the attached publication.
Downloads last week: 20
New download files: 17
New members: 3
Image not available

Grand Challenge Competition to Predict In Vivo Knee Loads

Provide a comprehensive data set with associated models that will enable researchers to validate musculoskeletal model estimates of muscle and joint contact forces in the knee.
Downloads last week: 16
Total downloads: 7,509
Image not available

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To provide free access to three-dimensional finite element representations of the knee joint 2) Open development of knee models for collaborative testing and use
Downloads last week: 58
Total downloads: 6,072
Image not available

PDBManip: PDB (Protein Data Bank) Editor & Manipulator Utility

PDBManip is a free program for editing and manipulating PDB (Protein Data Bank) files.
New download files: 1

By Category

Biological applications
Biocomputational focus

Communities

Jobs

Post­Doctoral Fellowship: Altered Control in Cerebral Palsy

UW Ability & Innovation Lab August 11, 2016
The University of Washington’s Ability & Innovation Lab has an opening for a postdoctoral fellow.

Post­Doctoral Fellowship: Tracking & Training Muscle Activity After Stroke

UW Ability & Innovation Lab August 11, 2016
The University of Washington’s Ability & Innovation Lab has an opening for a postdoctoral fellow focused on creating mobile technology to track and train muscle activity after stroke.

See all job openings...

News

Webinar on Best Practices and Lessons Learned in Getting BioGears Adopted

Credible Practice of Modeling & Simulation in Healthcare Sep 1, 2016
Image not availableThe Committee for Credible Practice of Modeling & Simulation in Healthcare (CPMS) invites you to join us for an informative webinar featuring Jeff Webb from Applied Research Associates on translating physiology modeling and simulation research into the clinic.

Course on Open-Source Tools for Computational Biomechanics

OpenSim Aug 30, 2016
Image not availableThe OpenSim team is participating in an IEEE Boston workshop on Thursday, September 15, 2016 that introduces participants to three open-source tools: GIBBON for image segmentation; FEBio for finite element analysis; and OpenSim for musculoskeletal modeling and simulation.

New file added: SimTK_optcntrlmuscle_V08242016.zip

Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem Aug 25, 2016
Image not availableA new file, SimTK_optcntrlmuscle_V08242016.zip, has been added to release 08/24/2016 of MuscleRedundancySolver.

OpenSim Workshop at Summer School on Neurorehabilitation

OpenSim May 5, 2016
Image not availableMassimo Sartori and Monica Reggiani are leading a workshop, "Musculoskeletal Modeling and Simulation of Human Movement in OpenSim" at the Summer School in Neurorehabilitation (http://www.ssnr2016.org/) in Baiona, Spain from June 6-10, 2016.

OpenSim Workshop at the International Shoulder Group meeting

OpenSim May 4, 2016
Image not availableThe 11th Conference of the International Shoulder Group (ISG) will be held from 14th-16th July 2016 in Winterthur, Switzerland and will include a half-day OpenSim workshop.

SimTK is maintained through Grant R01 GM107340 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Our Pledge and Your Responsibility

  About   Join
Version 2.0.6. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 5.3.2.
Feedback