Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1148 projects
767637 downloads
80418 members
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Trending Projects

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MSMBuilder

Provide extensible software for building Markov
State Models.
New followers: 1
Total downloads: 5,486
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SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 33
Total downloads: 2,463
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Musculoskeletal Model of Head and Neck Suitable for Dynamic Simulations

This project provides an improved model of the
head and neck, that is suitable for dynamic
simulations. This model is the first of its kind
to offer realistic moment generating capacity in
all directions.
New followers: 1
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FPSM - French Pediatric Shoulder Model to evaluate shoulder joint disorders

This is the first pediatric shoulder joint model
developed at an INSERM lab at LaTIM, France, to
evaluate pediatric shoulder joint biomechanics.
Pediatric joint models are scarce in OpenSIM and
scaling down adult models does not help determine
child-specific biomechanics in the areas of
shoulder disorders such as Obstetric Brachial
Plexus Palsy (OBPP). The goal of this project is
to determine the impact of abnormal
musculoskeletal structures in OBPP pathology.
Forum posts last week: 1
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Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 63
Total downloads: 5,204
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OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 992
Forum posts last week: 28
Total followers: 51
Total downloads: 159,709
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Lee-Son's Toolbox: a Toolbox that Converts VICON Mocap Data into OpenSim Inputs

　 Provide an easy and fast way to convert VICON
motion capture data into OpenSim inputs
Downloads last week: 28
Total downloads: 4,591
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Dynamic Arm Simulator

Provides a real-time, dynamic simulation of arm
movement.
Total followers: 21
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ForceBalance : Systematic Force Field Optimization

ForceBalance is a powerful and highly versatile
software package for force field optimization.
Forum posts last week: 1
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Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Total followers: 23
Total downloads: 3,436
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Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 25
Total downloads: 21,777
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 88
Forum posts last week: 15
Total followers: 56
Total downloads: 13,219
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SCONE: Open Source Software for Predicting Biological Motion

SCONE is open source software for predictive
simulation of biological motion. It optimizes
muscle excitation patterns and motion trajectories
according to high-level objectives, such as
walking speed and energy efficiency.
New download files: 7
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MMB (MacroMoleculeBuilder)

Easily model the structure and dynamics of
macromolecules
Downloads last week: 33
New download files: 1
Total downloads: 4,442
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A musculoskeletal model for simulations that involve high hip and knee flexion

The goal of this project was to developed a
refined musculoskeletal model capable of
simulating movements that involve substantial hip
and knee flexion (e.g. sprinting and cycling). The
model is based on the model published by Rajagopal
et al., (2016). Please cite the following
paper, "Lai, A.K.M, Arnold, A.S., Wakeling, J.M.
(2017) Why are antagonist muscles co-activated in
my simulation? A musculoskeletal model for
analysing human locomotor task. Annals of
Biomedical Engineering.
Downloads last week: 24

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Biological applications
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Jobs

Postdoc position in numerical models of human locomotion

The Biorobotics laboratory, EPFL
April 15, 2019
The Biorobotics laboratory at EPFL (Lausanne, Switzerland) has one open postdoc position in numerical simulations of human locomotion. The goal of the project is to develop neuromechanical models of human locomotion, together with Stéphane Armand (gait analysis, University of Geneva) and Alexandros Kalousis (machine learning, University of applied sciences, Western Switzerland), in the framework of a collaborative Sinergia project funded by the Swiss National Science Foundation.

Positions open

Case Western Reserve University
April 8, 2019
The Department of Biomedical Engineering at Case Western Reserve University in Cleveland Ohio is actively searching for strong doctoral or post-doctoral candidates in the areas of neurorehabilitation, biomechanical modeling and control system development to improve or restore motor function to individuals with Spinal Cord Injuries (SCI).

See all job openings...

News

Experimental determination of 3D knee compliance

The Virtual Human Knee: ligament & articular surface mechanics Feb 6, 2019
Image not availableThe pilot experiment drawing a link between clinically-viable uniaxial laxity test and 3D knee compliance have just gone out.

SimVascular New Release

SimVascular: Cardiovascular Modeling and Simulation Jan 24, 2019
Image not availablePlease visit our downloads page to access the new January 2019 SimVascular release for Mac, Windows and Linux!

Python scripts for Full Body Model are available

OpenSim Full Body Model with Python Jan 9, 2019
Image not availableNew project OpenSim Full Body Model with Python is available at SimTK: https://simtk.org/projects/fullbody-py It extends "Full Body Model for use in Dynamic Simulations of Human Gait" (https://simtk.org/projects/full_body) with Python scripts which are equivalent to the Matlab scrips provided with the model.

Simulations of Muscle Spasticity

Simulating Muscle Spasticity in Children with Cerebral Palsy Jan 3, 2019
Image not availableCode and data to simulate muscle spasticity during passive stretches and gait in children with cerebral palsy: https://simtk.org/projects/simcpspasticity/

First OpenArm 3D muscle deformation data set released!

OpenArm: Volumetric Models of Force- and Kinematic-Induced Muscle Deformation Nov 29, 2018
Image not availableThe first generation of the OpenArm data set has now been ported from our lab website to the SimTK community!

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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