Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1369 projects
1248560 downloads
100104 members
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Trending Projects

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Transtibial (below-knee) amputee OpenSim model and Biarticular Prosthesis

This project has two main aims: 1) To develop
and validate a transtibial amputee model with
representative mass, inertial, and muscular
properties 2) To use this model to analyze
collected gait data from transtibial amputees
walking on a Biarticular Prosthesis prototype
Downloads last week: 110
New followers: 1
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Musculoskeletal Model of the Lumbar Spine

Make publicly available a musculoskeletal model of
the lumbar spine to be used for modeling lumbar
spine kinematics as well as for further
improvement by the biomechanics community.
Downloads last week: 46
Total downloads: 11,124
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Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 128
Total downloads: 15,800
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Model of the Scapulothoracic Joint

Provide an OpenSim Joint model that enables a more
accurate representation of scapula mechanics in
musculoskeletal simulations.
Downloads last week: 54
Total followers: 24
Total downloads: 4,965
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Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how
muscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Downloads last week: 122
Total followers: 34
Total downloads: 16,922
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Synergy Extrapolation

Synergy extrapolation or SynX uses muscle synergy
structure to estimate missing muscle excitations.
Forum posts last week: 1
New download files: 1
New members: 2
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SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 44
Total downloads: 5,296
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OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 46
Total downloads: 14,322
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SCONE: Open Source Software for Predictive Simulation of Biological Motion

SCONE is open source software for predictive
simulation of biological motion. It optimizes
muscle excitation patterns and motion trajectories
according to high-level objectives, such as
walking speed and energy efficiency. Visit the
SCONE
homepage for more information, or check href="https://scone.software/doku.php?id=changes">
what's new in the latest version.
Forum posts last week: 16
Total followers: 21
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Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 111
Total downloads: 57,800
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OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,297
Forum posts last week: 21
Total followers: 245
New followers: 1
Total downloads: 366,565
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2007BioE15 Bruns

Submit materials for class
Total followers: 48
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Thoracolumbar spine and rib cage model in OpenSim

The aim of this project is to provide detailed and
well-validated musculoskeletal models of the
thoracolumbar spine and rib cage, particularly for
investigators with an interest studying
musculoskeletal loading in the trunk.
Total followers: 24
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OpenSim Moco

OpenSim Moco solves optimal control problems with
musculoskeletal models defined in OpenSim, using
direct collocation.
Forum posts last week: 5
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 101
Forum posts last week: 17
Total followers: 69
Total downloads: 20,286

By Category

Biological applications
Biocomputational focus

Communities

Jobs

Post doc position with OpenSim expertise

UC San Diego
December 2, 2020
The Institute for Engineering in Medicine at UC San Diego is recruiting for one or more post-doctoral scholars or project scientists with expertise in computational biomechanics and mechanobiology to develop integrative multi-scale models of tissues.

Post-Doctoral Biomechanical Modeling Fellowship

VA Puget Sound, Seattle, WA
November 13, 2020
The Extremity Trauma and Amputation Center of Excellence (EACE) is offering an ORISE learning opportunity that will focus on OpenSim musculoskeletal modeling software and the expansion of musculoskeletal models that will improve the clinical care of patients with lower limb musculoskeletal trauma.

Quality Assurance and Development Position for Open-Science Biomedical Simulation Website

Stanford University
October 30, 2020
The SimTK web platform is the “go-to” site for researchers who are developing and disseminating biosimulation software, models, and data for others to reuse. Run by Professor Scott Delp’s lab at Stanford University, the site has over 97,000 members. Our team is seeking a highly motivated and detail-oriented individual to assist us in testing the site across Web, iOS, and Android platforms. You will be a key player in enhancing this valuable platform to accelerate and increase the reproducibility of research within the biomedical simulation community.

See all job openings...

News

Publication on Ten Rules for Credible Practice of Modeling and Simulation in Healthcare

Credible Practice of Modeling & Simulation in Healthcare Oct 21, 2020
Image not availableDrawing on input from many stakeholders, the Committee on Credible Practice of Modeling and Simulation in Healthcare, an interdisciplinary group seeded from a U.S.

New file added: Generic_Juvenile_Model_Rev100.osim

A generic Juvenile Model based on 5 MRI Data Sets Oct 7, 2020
Image not availableA new generic model for a juvenile subjects, has been added to project "Generic Juvenile Model of children.

Youtube Tutorial Videos for SimVascular

SimVascular: Cardiovascular Modeling and Simulation Aug 28, 2020
Image not availableWe have generated a new set of tutorial videos for SimVascular covering the entire pipeline for modeling and simulation as well as many advanced features including FSI, LPN boundary conditions, 3D segmentation, and the 1D solver.

The Reference Model now models COVID-19

The Reference Model for Disease Progression Jul 31, 2020
Image not available The Reference Model for disease progression has been adapted to model COVID-19 for US states and territories.

OpenArm Multisensor data set and muscle contour tracking code released + slated for presentation at ASB & BioRob!

OpenArm: Volumetric & Time Series Models of Muscle Deformation Jul 24, 2020
Image not availableOur new time series muscle force/deformation/sEMG data set, OpenArm Multisensor, has now been released to the OpenArm database!

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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