OpenMM
An open-source toolkit for molecular simulation with extreme flexibility through custom forces and integrators and extreme performance through GPU acceleration... Learn more
Mycoplasma genitalium Whole-Cell Model
A detailed computational model of the entire life cycle of the bacterium Mycoplasma genitalium... Learn more
OpenSim
State-of-the-art modeling and simulation software for advancing our understanding of movement and designing improved treatments for movement abnormalities... Learn more
SimVascular
Providing a complete pipeline for patient-specific modeling from medical image data to cardiovascular blood flow simulation and analysis... Learn more
FEATURE
Modeling and finding functional domains in proteins by analyzing the structures of functionally similar proteins using supervised machine learning algorithms... Learn more
Trending Projects
Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB
This project overcomes neuromusculoskeletalsystems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 45
SCONE: Open Source Software for Predictive Simulation of Biological Motion
SCONE is open source software for predictivesimulation of biological motion. It optimizes
muscle excitation patterns and motion trajectories
according to high-level objectives, such as
walking speed and energy efficiency. Visit the
SCONE
homepage for more information.
Forum posts last week: 15
Biomedical Computation Review
The pupose of this projects is to host the codethat runs the Biomedical Computation Review
website and database.
New followers: 1
Open Knee(s): Virtual Biomechanical Representations of the Knee Joint
Overall purposes of the project are: 1) Toprovide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 413
Total followers: 37
Total downloads: 42,810
Musculoskeletal Model of the Lumbar Spine
Make publicly available a musculoskeletal model ofthe lumbar spine to be used for modeling lumbar
spine kinematics as well as for further
improvement by the biomechanics community.
Downloads last week: 52
Total downloads: 10,541
Upper Extremity Kinematic Model
Upper-extremity available for download along withaccompanying publications.
Total followers: 20
Total downloads: 6,860
Grand Challenge Competition to Predict In Vivo Knee Loads
Provide a comprehensive data set with associatedmodels that will enable researchers to validate
musculoskeletal model estimates of muscle and
joint contact forces in the knee.
Downloads last week: 52
Total downloads: 16,287
The Musculoskeletal Atlas Project
Provides an easy-to-use application forvisualising imaging data, segmenting images,
creating geometric meshes, and exporting OpenSim
and FE models.
Total followers: 21
Upper Extremity Dynamic Model
Provides the files associated with a dynamic modelof the upper limb for use in SIMM or OpenSim.
Total followers: 28
Total downloads: 4,230
An Open-Source OpenSim Oculomotor Model for Kinematics and Dynamics Simulation
New download files: 1
Stiffness Modulation of Redundant Musculoskeletal Systems
Computing the task and joint stiffness usinginverse methods that account for the
musculoskeletal redundancy effects.
New download files: 1
Simulations of Crouch Gait
Simulations of individuals with cerebral palsywho walk in a crouch gait . These simulations
were used in analyses of (1) contributions to mass
center accelerations, (2) impacts of muscle
weakness, (3) magnitudes of tibiofemoral contact
forces, and (4) evaluations of ankle foot orthoses
during crouch gait. Downloads provide all
supporting files for OpenSim simulations. Please
see accompanying publications for more
information.
Downloads last week: 42
Total downloads: 6,103
FragFEATURE: Knowledge-based Fragment Binding Prediction
Provide a knowledge-based fragment bindingpredictor as well as the underlying knowledge
base.
New members: 1
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Biological applications
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Jobs
Fully funded PhD position
University of Wyoming
February 12, 2020
February 12, 2020
Prof. Domen Novak of the Department of Electrical and Computer Engineering at the University of Wyoming is searching for a motivated PhD candidate for a fully funded position.
Postdoctoral position
University of California, Irvine
January 29, 2020
January 29, 2020
The Biorobotics Laboratory at the University of California at Irvine is seeking a highly qualified and motivated individual for a post-doctoral research position. The Biorobotics Laboratory provides a rich training environment for individuals interested in the interplay of rehabilitation robotics and wearable sensing with computational motor control.
Two faculty positions
Cleveland State University
January 29, 2020
January 29, 2020
The Department of Mechanical Engineering at Cleveland State University is searching for two faculty members at the Assistant Professor (tenure-track) level, starting August 17, 2020. Candidates are expected to develop a research program within the existing Center for Human-Machine Systems and teach courses in the undergraduate and graduate curricula of the department.
News
OpenSim Webinar: Which simulation pipeline should I use? An overview of common workflows
OpenSim
Apr 20, 2020
OpenSim Webinar: Characterizing hyperreflexia and abnormal coordination in post-stroke stiff-knee gait
OpenSim
Feb 25, 2020
OpenSim Webinar: Computational Models of Reaching to Test Hypotheses in Motor Control
OpenSim
Jan 28, 2020