OpenMM
An open-source toolkit for molecular simulation with extreme flexibility through custom forces and integrators and extreme performance through GPU acceleration... Learn more
Mycoplasma genitalium Whole-Cell Model
A detailed computational model of the entire life cycle of the bacterium Mycoplasma genitalium... Learn more
OpenSim
State-of-the-art modeling and simulation software for advancing our understanding of movement and designing improved treatments for movement abnormalities... Learn more
SimVascular
Providing a complete pipeline for patient-specific modeling from medical image data to cardiovascular blood flow simulation and analysis... Learn more
FEATURE
Modeling and finding functional domains in proteins by analyzing the structures of functionally similar proteins using supervised machine learning algorithms... Learn more
Trending Projects
Grand Challenge Competition to Predict In Vivo Knee Loads
Provide a comprehensive data set with associated models that will enable researchers to validate musculoskeletal model estimates of muscle and joint contact forces in the knee.Downloads last week: 40
Total downloads: 9,449
Multiple Speed Walking Simulations
A database of walking simulations as described in Liu et al., Nov 2008 (J Biomechanics), available for download and use by others.Downloads last week: 23
Total downloads: 1,636
MB Knee: Multibody Models of the Human Knee
Provide the components for building multibody knee models based on three cadaver subjects. The site also provides complete example models including contacts, ligaments, and menisci.New followers: 1
Total downloads: 3,985
Modeling, Evaluation, and Control Optimization of Exosuit with OpenSim
- Gives an example of how to use OpenSim as an analysis tool of wearable device - Provide example simulation models that is easy to use and modifyForum posts last week: 1
SimVascular: Examples and Clinical Cases
Download examples and clinical case files for cardiovascular modeling and simulation compatible with SimVascularDownloads last week: 16
Specimen-Specific Models of the Healthy Knee
Provide a sophisticated, patient-specific, model of the knee for research in rehabilitation, physical therapy, orthopedic surgery, implant design, and sports performance.New followers: 1
Hip Musculoskeletal Model
A detailed model of the muscles spanning the hip joint for muscle force and joint load prediction at the hip.New followers: 1
Lower Extremity EMG-driven Modeling with Automated Adjustment of Geometry
This project provides Matlab code for developing EMG-driven models of walking using scaled OpenSim lower extremity musculoskeletal models.Forum posts last week: 1
SimVascular: Cardiovascular Modeling and Simulation
Provides a platform for patient-specific cardiovascular modeling and simulation.Downloads last week: 81
Forum posts last week: 6
Total followers: 39
Total downloads: 7,578
Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)
Provides an easy to use toolbox, compatible with OpenSim, for the estimation of the human lower extremity muscle and joint dynamics.Forum posts last week: 2
Total followers: 23
AMBER-FB15 data repository
Quantum chemistry and ForceBalance data files used in the optimization of the AMBER-FB15 protein force field.New download files: 2
OpenSim
Provide easy-to-use, extensible software for modeling, simulating, controlling, and analyzing the neuromusculoskeletal system.Downloads last week: 1,085
Forum posts last week: 22
Total followers: 153
New followers: 1
Total downloads: 189,004
Muscle-actuated Simulation of Human Running
The purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running.Downloads last week: 48
Total downloads: 9,473
Musculoskeletal Model of the Lumbar Spine
Make publicly available a musculoskeletal model of the lumbar spine to be used for modeling lumbar spine kinematics as well as for further improvement by the biomechanics community.Downloads last week: 21
Total downloads: 7,765
DeepCell: Deep convolutional neural networks for image segmentation
Provide source code for deep learning based image segmentationDownloads last week: 32
Total downloads: 1,372
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Jobs
Postdoc position in computational modeling
Uppsala University Sep 9, 2017
We invite applications for 2 computational modelling postdoctoral appointments of minimum two years each (with the possibility of extension) in the Vascular Biology Unit of the Department of Immunology, Genetics and Pathology, Uppsala University, Sweden.
Software Engineer (Protein Design, Structure Bioinformatics)
DNASTAR, Inc. Aug 28, 2017
The successful candidate will collaborate in the research, development, and scientific validation of new modeling and simulation techniques for membrane proteins as well as the commercialization of software workflows with these tools.
News
Webinar on why antagonists are activated in hip and knee flexion simulations
OpenSim Sep 23, 2017
SimVascular New Release
SimVascular: Cardiovascular Modeling and Simulation Sep 23, 2017
Webinar on understanding how exoskeletons affect muscle-tendon mechanics during walking
OpenSim Sep 9, 2017
Announcing new SimCardio Project!
SimVascular: Cardiovascular Modeling and Simulation Jun 30, 2017