Lower Extremity EMG-driven Modeling with Automated Adjustment of Geometry

This project provides Matlab code for developing EMG-driven models of walking using scaled OpenSim lower extremity musculoskeletal models.
Forum posts last week: 1

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, Mycoplasma genitalium.
Downloads last week: 49
Total downloads: 15,992

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To provide free access to three-dimensional finite element representations of the knee joint 2) Open development of knee models for collaborative testing and use
Downloads last week: 152
Total followers: 22
New followers: 1
Total downloads: 11,063

Musculoskeletal Model of the Lumbar Spine

Make publicly available a musculoskeletal model of the lumbar spine to be used for modeling lumbar spine kinematics as well as for further improvement by the biomechanics community.
Downloads last week: 24
Total downloads: 7,753

LAPACK linear algebra library (with BLAS)

Provide high quality, high performance numerical methods for matrix arithmetic and for solving linear algebra problems.
Downloads last week: 24
Total downloads: 1,360

OpenSim

Provide easy-to-use, extensible software for modeling, simulating, controlling, and analyzing the neuromusculoskeletal system.
Downloads last week: 985
Forum posts last week: 30
Total followers: 153
New followers: 1
Total downloads: 188,633

Grand Challenge Competition to Predict In Vivo Knee Loads

Provide a comprehensive data set with associated models that will enable researchers to validate musculoskeletal model estimates of muscle and joint contact forces in the knee.
Downloads last week: 36
Total downloads: 9,434

Matlab-Opensim Interfaces

Provides tools for using different aspects of Opensim within the Matlab environment, including command line pipelines as well as accessing the Opensim API directly. The main functionality has now been included as part of Opensim 3.0 with improved functionality (and will become more obsolete with Opensim 4.0). Please see the developer wiki for more information. Therefore this is being kept only as an archive, and users should see the documentation on interfacing Matlab with Opensim on the Opensim website (http://simtk-confluence.stanford.edu:8080/display/OpenSim/Scripting+with+Matlab). As such the forums etc will not be monitored.
Downloads last week: 14
Total downloads: 3,410

MMB (MacroMoleculeBuilder)

Easily model the structure and dynamics of macromolecules
Downloads last week: 15
Total downloads: 3,769

SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific cardiovascular modeling and simulation.
Downloads last week: 68
Forum posts last week: 16
Total followers: 39
Total downloads: 7,549

2007BioE15 Bruns

Submit materials for class
Total followers: 21

OpenMM Zephyr

OpenMM Zephyr provides a visual application for running GPU-accelerated molecular simulations.
Downloads last week: 14
Total downloads: 8,616

OpenMM

OpenMM includes everything one needs to run modern molecular simulations. It is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent GPUs.
Downloads last week: 461
Forum posts last week: 10
Total followers: 40
New followers: 1
Total downloads: 102,259

DeepCell: Deep convolutional neural networks for image segmentation

Provide source code for deep learning based image segmentation
Downloads last week: 36
Total downloads: 1,361

Modeling, Evaluation, and Control Optimization of Exosuit with OpenSim

- Gives an example of how to use OpenSim as an analysis tool of wearable device - Provide example simulation models that is easy to use and modify
Forum posts last week: 1