Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1174 projects
798423 downloads
82093 members
Join Us

Trending Projects

Image not available

Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 164
Total downloads: 6,237
Image not available

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 138
Total downloads: 22,544
Image not available

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To
provide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 227
Total followers: 31
Total downloads: 23,404
Image not available

Simbios Dissemination

Main repository for Simbios dissemination-related
tasks and materials
Downloads last week: 34
Total downloads: 2,071
Image not available

SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 32
Total downloads: 2,723
Image not available

Model of the Scapulothoracic Joint

Provide an OpenSim Joint model that enables a more
accurate representation of scapula mechanics in
musculoskeletal simulations.
Downloads last week: 29
Total downloads: 3,091
Image not available

OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 33
Total downloads: 10,659
Image not available

Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how
muscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Downloads last week: 67
Total followers: 28
Total downloads: 13,207
Image not available

SCONE: Open Source Software for Predictive Simulation of Biological Motion

SCONE is open source software for predictive
simulation of biological motion. It optimizes
muscle excitation patterns and motion trajectories
according to high-level objectives, such as
walking speed and energy efficiency.
New download files: 1
Image not available

Lower Extremity EMG-driven Modeling with Automated Adjustment of Geometry

This project provides Matlab code for developing
EMG-driven models of walking using scaled OpenSim
lower extremity musculoskeletal models.
New followers: 1
Image not available

Wrist Anatomy and Kinematics Data Collection

The current collection includes carpal bone
anatomy models from 90 healthy subjects (120
wrists), and the carpal bone kinematics in 1215
unique wrist positions. A graphical user interface
(GUI) is also developed to maximize user
interaction with this collection.
New followers: 1
Image not available

Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with
OpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 30
Total downloads: 2,180
Image not available

The Musculoskeletal Atlas Project

Provides an easy-to-use application for
visualising imaging data, segmenting images,
creating geometric meshes, and exporting OpenSim
and FE models.
Total followers: 20
New followers: 1
Image not available

XSens - OpenSim modelling

This project intends to assess the feasibility of
using inertia-tracking system (i.e. XSens) to
provide input data for modelling in OpenSim. We
managed to adapt the LaiArnold2017 model to the
'T-pose' used for XSens to scale their
biomechanical model. We also updated the segment
masses to follow deLeva 1996 antropometric data.
New followers: 1
Image not available

OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 783
Forum posts last week: 42
Total followers: 207
Total downloads: 275,394

By Category

Biological applications
Biocomputational focus

Communities

Jobs

Postdoc position in numerical models of human locomotion

The Biorobotics laboratory, EPFL
April 15, 2019
The Biorobotics laboratory at EPFL (Lausanne, Switzerland) has one open postdoc position in numerical simulations of human locomotion. The goal of the project is to develop neuromechanical models of human locomotion, together with Stéphane Armand (gait analysis, University of Geneva) and Alexandros Kalousis (machine learning, University of applied sciences, Western Switzerland), in the framework of a collaborative Sinergia project funded by the Swiss National Science Foundation.

Positions open

Case Western Reserve University
April 8, 2019
The Department of Biomedical Engineering at Case Western Reserve University in Cleveland Ohio is actively searching for strong doctoral or post-doctoral candidates in the areas of neurorehabilitation, biomechanical modeling and control system development to improve or restore motor function to individuals with Spinal Cord Injuries (SCI).

See all job openings...

News

SimVascular Workshop and Booth at SB3C 2019

SimVascular: Cardiovascular Modeling and Simulation Jun 21, 2019
Image not availableJoin us for a SimVascular workshop and new user training at the SB3C meeting June 25th 11:30am.

Webinar: Predictive Simulations to Study the Plantarflexors in Gait Pathologies

OpenSim May 3, 2019
Image not availableWe invite you to join us for a webinar featuring Carmichael Ong from Stanford University.

Experimental determination of 3D knee compliance

The Virtual Human Knee: ligament & articular surface mechanics Feb 6, 2019
Image not availableThe pilot experiment drawing a link between clinically-viable uniaxial laxity test and 3D knee compliance have just gone out.

SimVascular New Release

SimVascular: Cardiovascular Modeling and Simulation Jan 24, 2019
Image not availablePlease visit our downloads page to access the new January 2019 SimVascular release for Mac, Windows and Linux!

Python scripts for Full Body Model are available

OpenSim Full Body Model with Python Jan 9, 2019
Image not availableNew project OpenSim Full Body Model with Python is available at SimTK: https://simtk.org/projects/fullbody-py It extends "Full Body Model for use in Dynamic Simulations of Human Gait" (https://simtk.org/projects/full_body) with Python scripts which are equivalent to the Matlab scrips provided with the model.

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Our Pledge and Your Responsibility

  About   Join
Version 3.0.4. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 5.3.2.
Feedback