Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1195 projects
823842 downloads
83275 members
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Trending Projects

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Protein Engineering through Computational Design

Provides protein engineers with tools to assess
the atomistic implications of their mutations.
New followers: 1
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SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 32
Total downloads: 2,931
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OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 513
Forum posts last week: 6
Total followers: 53
Total downloads: 177,631
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Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To
provide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 146
Total followers: 32
Total downloads: 24,685
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OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 516
Forum posts last week: 18
Total followers: 212
Total downloads: 280,083
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Simbody: Multibody Physics API

Simbody is useful for internal coordinate and
coarse grained molecule modeling, large scale
mechanical models like skeletons, and anything
else that can be modeled as bodies interconnected
by joints, acted upon by forces, and restricted by
constraints.
Forum posts last week: 1
Total downloads: 4,345
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Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Total followers: 23
Total downloads: 3,657
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2007BioE15 Bruns

Submit materials for class
Total followers: 44
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Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 73
Total downloads: 7,305
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Upper Extremity Kinematic Model

Upper-extremity available for download along with
accompanying publications.
Downloads last week: 18
Total downloads: 6,192
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Gait data children with spastic CP and typically developing children

This data contains total body plug in gait
markerset during walking at a preferred walking
speed in children with cerebral palsy (hemiplegia
n=5, 9.00 ± 2.28; diplegia n=4, age 10.50 ±1.66)
and typically developing children (n=5, age 8.40
± 1.50).
New followers: 1
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Wrist Anatomy and Kinematics Data Collection

The current collection includes carpal bone
anatomy models from 90 healthy subjects (120
wrists), and the carpal bone kinematics in 1215
unique wrist positions. A graphical user interface
(GUI) is also developed to maximize user
interaction with this collection.
Forum posts last week: 4
New download files: 1
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FEATURE-Viz: A Web-Based Visualization System for Comparing Pocket Similarity

Provide an easy-to-use visualization software
comparing two ligand binding sites.
New followers: 1
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Rapid 3D muscle-driven predictive simulations

This project contains code and data to perform 3D
muscle-driven predictive simulations of gait.
New followers: 1
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Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 20
Total downloads: 23,239

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Biological applications
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Jobs

Postdoctoral Researcher in Biomechanics

Royal Veterinary College
July 8, 2019
A postdoc on the DAWNDINOS project is searched, ideally with sophisticated dynamic simulation experience; OpenSim + optimal control theory would be ideal.

See all job openings...

News

OpenArm 2.0 data set released + scheduled for presentation at EMBC Berlin!

OpenArm: Volumetric Models of Force- and Kinematic-Induced Muscle Deformation Jul 16, 2019
Image not availableThe OpenArm 2.0 muscle deformation data set has now been released to SimTK, and is scheduled for presentation at EMBC 2019 in Berlin!

SimVascular Workshop and Booth at SB3C 2019

SimVascular: Cardiovascular Modeling and Simulation Jun 21, 2019
Image not availableJoin us for a SimVascular workshop and new user training at the SB3C meeting June 25th 11:30am.

Webinar: Predictive Simulations to Study the Plantarflexors in Gait Pathologies

OpenSim May 3, 2019
Image not availableWe invite you to join us for a webinar featuring Carmichael Ong from Stanford University.

Experimental determination of 3D knee compliance

The Virtual Human Knee: ligament & articular surface mechanics Feb 6, 2019
Image not availableThe pilot experiment drawing a link between clinically-viable uniaxial laxity test and 3D knee compliance have just gone out.

SimVascular New Release

SimVascular: Cardiovascular Modeling and Simulation Jan 24, 2019
Image not availablePlease visit our downloads page to access the new January 2019 SimVascular release for Mac, Windows and Linux!

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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