Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running

Software and data to reproduce publication results
New followers: 1

Identification of 139 Human Transcriptomic Modules using ICA

We identified 139 transcriptomic profiles (aka Functional Components; FCs) in a data-driven fashion from a large set of microarray data from GEO. We also constructed a human tissue compendium to accompany the work. We have written up an R package that wou
New download files: 1

SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific cardiovascular modeling and simulation.
Downloads last week: 41
Forum posts last week: 17
New download files: 4
Total followers: 39
Total downloads: 7,271

OpenSim Soccer Ball Kicking Example

Provides an installer for producing forward dynamics simulations of a soccer ball kick.
Downloads last week: 16
Total downloads: 3,059

Matlab-Opensim Interfaces

Provides tools for using different aspects of Opensim within the Matlab environment, including command line pipelines as well as accessing the Opensim API directly. The main functionality has now been included as part of Opensim 3.0 with improved functionality (and will become more obsolete with Opensim 4.0). Please see the developer wiki for more information. Therefore this is being kept only as an archive, and users should see the documentation on interfacing Matlab with Opensim on the Opensim website (http://simtk-confluence.stanford.edu:8080/display/OpenSim/Scripting+with+Matlab). As such the forums etc will not be monitored.
Downloads last week: 20
Total downloads: 3,356

Predicting Cell Deformation from Body Level Mechanical Loads

1) To develop computational models of the knee joint at multiple resolutions 2) To obtain cell deformations in cartilage, ligaments and menisci as a function of knee loading 3) To validate multiscale knee simulations
New download files: 1

MSMBuilder

Provide extensible software for building Markov State Models.
Forum posts last week: 4
Total downloads: 5,672

VA-Squish: Determining Cartilage Linear Biphasic constants from Indentation test

Provides a fast and easy method (using MATLAB) to calculate the best-fit linear biphasic constants of cartilage, based on input from a standardized indentation test.
New members: 1

2007BioE15 Bruns

Submit materials for class
Total followers: 20
New followers: 1

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, Mycoplasma genitalium.
Downloads last week: 37
Total downloads: 15,640

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To provide free access to three-dimensional finite element representations of the knee joint 2) Open development of knee models for collaborative testing and use
Downloads last week: 47
Total followers: 21
Total downloads: 10,676

Simulations of Crouch Gait

Simulations of individuals with cerebral palsy who walk in a crouch gait . These simulations were used in analyses of (1) contributions to mass center accelerations, (2) impacts of muscle weakness, (3) magnitudes of tibiofemoral contact forces, and (4) evaluations of ankle foot orthoses during crouch gait. Downloads provide all supporting files for OpenSim simulations. Please see accompanying publications for more information.
Downloads last week: 33
Total downloads: 2,086

Lee-Son's Toolbox: a Toolbox that Converts VICON Mocap Data into OpenSim Inputs

　 Provide an easy and fast way to convert VICON motion capture data into OpenSim inputs
Downloads last week: 15
Total downloads: 3,089

Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running.
Downloads last week: 33
Total downloads: 9,322

Modeling, Evaluation, and Control Optimization of Exosuit with OpenSim

- Gives an example of how to use OpenSim as an analysis tool of wearable device - Provide example simulation models that is easy to use and modify
Forum posts last week: 1