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<<PageList(Specifications/DataAnalysis)>> |
Contents
All Data Analysis Procedures
In Vivo Data Analysis Workflow
The following list outlines the data analysis workflow for in vivo experimentation with corresponding specification pages that give further instruction/details of the procedures.
Specifications/DataAnalysis/FileAssociation
- Associate the ultrasound files to the appropriate data (tdms) files and provide the time synchronization (dT) XML files.
Specifications/DataAnalysis/QualityAssurance
- Provides an overview of the data. The figures developed should be visually inspected for irregularities in the data and ultrasound images.
- Supporting Specifications:
Specifications/DataManagement: Data uploaded to internal storage (Midas)
- Supporting Specifications:
- Provides an overview of the data. The figures developed should be visually inspected for irregularities in the data and ultrasound images.
Specifications/DataAnalysis/ThicknessAnalysis
- Output: XML document of thickness measurements with associated forces, force/thickness plots, first analyzed image for each trial, and thickness inclusion file
- Supporting Specifications:
Specifications/DataManagement: Thickness data uploaded to internal storage (Midas)
- Supporting Specifications:
- Output: XML document of thickness measurements with associated forces, force/thickness plots, first analyzed image for each trial, and thickness inclusion file
In Vitro Data Analysis Workflow
The following list outlines the data analysis workflow for in vitro experimentation with corresponding specification pages that give further instruction/details of the procedures.
Specifications/DataAnalysis/FileAssociation
- Associate the ultrasound files to the appropriate data (tdms) files and provide the time synchronization (dT) XML files.
- Combine associated data for arm and leg (use Linux computer)
- Download both zip folders from Midas
- Unzip both directories
- Use rsync to combine the folders
- Command: rsync -azvh "Most recent arm/leg directory" "Initial arm/leg directory"
- This will copy all data from the first directory into the second directory.
- Zip and upload to Midas as CMULTIS00X-1_associated_combined.zip
Specifications/DataAnalysis/QualityAssurance
- Provides an overview of the data. The figures developed should be visually inspected for irregularities in the data and ultrasound images.
- Supporting Specifications:
Specifications/DataManagement: Data uploaded to internal storage (Midas)
- Supporting Specifications:
- Provides an overview of the data. The figures developed should be visually inspected for irregularities in the data and ultrasound images.
Specifications/DataAnalysis/ThicknessAnalysis
- Output: XML document of thickness measurements with associated forces, force/thickness plots, first analyzed image for each trial, and thickness inclusion file.
- Supporting Specifications:
Specifications/DataManagement: Thickness data uploaded to internal storage (Midas)
- Supporting Specifications:
- Output: XML document of thickness measurements with associated forces, force/thickness plots, first analyzed image for each trial, and thickness inclusion file.
Specifications/DataAnalysis/Registration
- Transform ultrasound probe tip positions into appropriate coordinate system for modeling (CT or MR).