org.simtk.molecularstructure.nucleicacid
Class BaseStack

java.lang.Object
  org.simtk.molecularstructure.SecondaryStructureClass
      org.simtk.molecularstructure.nucleicacid.BaseStack

All Implemented Interfaces:

SecondaryStructure

public class BaseStack
extends SecondaryStructureClass

Nested Class Summary

Nested classes/interfaces inherited from class org.simtk.molecularstructure.SecondaryStructureClass

SecondaryStructureClass.SourceType

Field Summary

Fields inherited from class org.simtk.molecularstructure.SecondaryStructureClass

parentMolecules, residues, resLimit, sourceType

Constructor Summary

BaseStack()

BaseStack(java.util.Collection<Residue> residues)

BaseStack(java.util.Collection<Residue> residues, java.lang.String source)

Method Summary

Methods inherited from class org.simtk.molecularstructure.SecondaryStructureClass

addMolecule, addResidue, getMolecules, getResidueIterator, getSource, residues, setMolecule, setSource

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BaseStack

public BaseStack()

BaseStack

public BaseStack(java.util.Collection<Residue> residues)

BaseStack

public BaseStack(java.util.Collection<Residue> residues,
                 java.lang.String source)