org.simtk.molecularstructure
Interface SecondaryStructure

All Known Implementing Classes:

BasePair, BaseStack, BaseTriple, BetaStrand, Duplex, Helix, Pseudoknot, SecondaryStructureClass

public interface SecondaryStructure

Base class for alpha helices, beta strands, beta sheets, and RNA duplexes

Method Summary

boolean	addMolecule(Biopolymer biopolymer)
void	addResidue(Residue residue)
java.util.Collection<Biopolymer>	getMolecules()
java.util.Iterator<Residue>	getResidueIterator()
SecondaryStructureClass.SourceType	getSource()
java.util.Collection<Residue>	residues()
void	setMolecule(Biopolymer biopolymer)
void	setSource(java.lang.String string)

Method Detail

getResidueIterator

java.util.Iterator<Residue> getResidueIterator()

addResidue

void addResidue(Residue residue)

setMolecule

void setMolecule(Biopolymer biopolymer)

addMolecule

boolean addMolecule(Biopolymer biopolymer)

getMolecules

java.util.Collection<Biopolymer> getMolecules()

setSource

void setSource(java.lang.String string)

getSource

SecondaryStructureClass.SourceType getSource()

residues

java.util.Collection<Residue> residues()