Uses of Class
org.simtk.molecularstructure.nucleicacid.BasePair

Packages that use BasePair

org.simtk.molecularstructure.nucleicacid

Uses of BasePair in org.simtk.molecularstructure.nucleicacid

Methods in org.simtk.molecularstructure.nucleicacid that return BasePair

static BasePair	BasePair.getBasePair(Residue r1, Residue r2, java.lang.String source)
static BasePair	BasePair.makeBasePair(Residue r1, Residue r2, java.lang.String source)

Methods in org.simtk.molecularstructure.nucleicacid that return types with arguments of type BasePair

java.util.List<BasePair>	Duplex.basePairs()
java.util.Collection<BasePair>	BaseTriple.basePairs()
java.util.Collection<BasePair>	NucleicAcid.identifyBasePairs()

Methods in org.simtk.molecularstructure.nucleicacid with parameters of type BasePair

void	Duplex.addBasePair(BasePair bp)

Constructors in org.simtk.molecularstructure.nucleicacid with parameters of type BasePair

BaseTriple(BasePair bp1, BasePair bp2, BasePair bp3)

Constructor parameters in org.simtk.molecularstructure.nucleicacid with type arguments of type BasePair

BaseTriple(java.util.Collection<BasePair> basepairs)

BaseTriple(java.util.Collection<BasePair> basepairs, java.lang.String source)