org.simtk.molecularstructure.nucleicacid
Class Duplex

java.lang.Object
  org.simtk.molecularstructure.SecondaryStructureClass
      org.simtk.molecularstructure.nucleicacid.Duplex

All Implemented Interfaces:

SecondaryStructure

public class Duplex
extends SecondaryStructureClass

Nested Class Summary

Nested classes/interfaces inherited from class org.simtk.molecularstructure.SecondaryStructureClass

SecondaryStructureClass.SourceType

Field Summary

Fields inherited from class org.simtk.molecularstructure.SecondaryStructureClass

parentMolecules, residues, resLimit, sourceType

Constructor Summary

Duplex()

Method Summary

void	addBasePair(BasePair bp)
java.util.List<BasePair>	basePairs()
java.lang.String	helixString()

Methods inherited from class org.simtk.molecularstructure.SecondaryStructureClass

addMolecule, addResidue, getMolecules, getResidueIterator, getSource, residues, setMolecule, setSource

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Duplex

public Duplex()

Method Detail

basePairs

public java.util.List<BasePair> basePairs()

addBasePair

public void addBasePair(BasePair bp)

helixString

public java.lang.String helixString()