org.simtk.molecularstructure.protein
Class Helix

java.lang.Object
  org.simtk.molecularstructure.SecondaryStructureClass
      org.simtk.molecularstructure.protein.Helix

All Implemented Interfaces:

SecondaryStructure

public class Helix
extends SecondaryStructureClass

Nested Class Summary

Nested classes/interfaces inherited from class org.simtk.molecularstructure.SecondaryStructureClass

SecondaryStructureClass.SourceType

Field Summary

static org.simtk.molecularstructure.protein.HelixType	ALPHA
static org.simtk.molecularstructure.protein.HelixType	LEFT_HANDED_ALPHA
static org.simtk.molecularstructure.protein.HelixType	LEFT_HANDED_GAMMA
static org.simtk.molecularstructure.protein.HelixType	LEFT_HANDED_OMEGA
static org.simtk.molecularstructure.protein.HelixType	POLYPROLINE
static org.simtk.molecularstructure.protein.HelixType	RIBBON_HELIX_27
static org.simtk.molecularstructure.protein.HelixType	RIGHT_HANDED_310
static org.simtk.molecularstructure.protein.HelixType	RIGHT_HANDED_ALPHA
static org.simtk.molecularstructure.protein.HelixType	RIGHT_HANDED_GAMMA
static org.simtk.molecularstructure.protein.HelixType	RIGHT_HANDED_OMEGA
static org.simtk.molecularstructure.protein.HelixType	RIGHT_HANDED_PI

Fields inherited from class org.simtk.molecularstructure.SecondaryStructureClass

parentMolecules, residues, resLimit, sourceType

Constructor Summary

Helix()

Method Summary

org.simtk.molecularstructure.protein.HelixType	getHelixType()
void	setHelixType(org.simtk.molecularstructure.protein.HelixType helixType)

Methods inherited from class org.simtk.molecularstructure.SecondaryStructureClass

addMolecule, addResidue, getMolecules, getResidueIterator, getSource, residues, setMolecule, setSource

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ALPHA

public static org.simtk.molecularstructure.protein.HelixType ALPHA

RIGHT_HANDED_ALPHA

public static org.simtk.molecularstructure.protein.HelixType RIGHT_HANDED_ALPHA

RIGHT_HANDED_OMEGA

public static org.simtk.molecularstructure.protein.HelixType RIGHT_HANDED_OMEGA

RIGHT_HANDED_PI

public static org.simtk.molecularstructure.protein.HelixType RIGHT_HANDED_PI

RIGHT_HANDED_GAMMA

public static org.simtk.molecularstructure.protein.HelixType RIGHT_HANDED_GAMMA

RIGHT_HANDED_310

public static org.simtk.molecularstructure.protein.HelixType RIGHT_HANDED_310

LEFT_HANDED_ALPHA

public static org.simtk.molecularstructure.protein.HelixType LEFT_HANDED_ALPHA

LEFT_HANDED_OMEGA

public static org.simtk.molecularstructure.protein.HelixType LEFT_HANDED_OMEGA

LEFT_HANDED_GAMMA

public static org.simtk.molecularstructure.protein.HelixType LEFT_HANDED_GAMMA

RIBBON_HELIX_27

public static org.simtk.molecularstructure.protein.HelixType RIBBON_HELIX_27

POLYPROLINE

public static org.simtk.molecularstructure.protein.HelixType POLYPROLINE

Constructor Detail

Helix

public Helix()

Method Detail

setHelixType

public void setHelixType(org.simtk.molecularstructure.protein.HelixType helixType)

getHelixType

public org.simtk.molecularstructure.protein.HelixType getHelixType()