org.simtk.molecularstructure.protein
Class PDBProteinClass

java.lang.Object
  org.simtk.molecularstructure.MolecularClass
      org.simtk.molecularstructure.MoleculeClass
          org.simtk.molecularstructure.BiopolymerClass
              org.simtk.molecularstructure.protein.PDBProteinClass

All Implemented Interfaces:

MassBody, Biopolymer, Chemical, Molecular, Molecule, Protein

public class PDBProteinClass
extends BiopolymerClass
implements Protein

Field Summary

Fields inherited from class org.simtk.molecularstructure.MoleculeClass

chainId, displaySourceTypes

Constructor Summary

PDBProteinClass(char chainId)

Method Summary

protected void

addGenericResidueBonds()

Methods inherited from class org.simtk.molecularstructure.BiopolymerClass

addGenericResidueBond, addSecondaryStructure, displayableStructures, getResidue, getResidueByNumber, getResidueByNumber, getResidueByNumber, residues, secondaryStructures

Methods inherited from class org.simtk.molecularstructure.MoleculeClass

createFactoryPDBMolecule, createFactoryPDBMolecule, createFactoryPDBMolecule, getDisplaySourceTypes, getPdbChainId, isSolvent, setDisplaySourceTypes, setPdbChainId

Methods inherited from class org.simtk.molecularstructure.MolecularClass

atoms, bestPlane3D, getCenterOfMass, getMass

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simtk.molecularstructure.Biopolymer

getResidue, getResidueByNumber, residues, secondaryStructures

Methods inherited from interface org.simtk.molecularstructure.Molecule

getDisplaySourceTypes, getPdbChainId, isSolvent, setDisplaySourceTypes

Methods inherited from interface org.simtk.molecularstructure.Molecular

atoms, bestPlane3D

Methods inherited from interface org.simtk.geometry3d.MassBody

getCenterOfMass, getMass

Constructor Detail

PDBProteinClass

public PDBProteinClass(char chainId)

Method Detail

addGenericResidueBonds

protected void addGenericResidueBonds()

Overrides:

addGenericResidueBonds in class BiopolymerClass