Serialized Form

Package org.simtk.geometry3d

Class org.simtk.geometry3d.Angle extends java.lang.Number implements Serializable

serialVersionUID: 1L

Serialized Fields

radianAngle

double radianAngle

angleRange

Angle.Range angleRange

angleUnits

Angle.Units angleUnits

Class org.simtk.geometry3d.Hash3D extends java.util.HashMap<Vector3D,V> implements Serializable

Serialized Fields

cubeletSize

double cubeletSize

cubelets

java.util.Map<K,V> cubelets

Class org.simtk.geometry3d.InsufficientPointsException extends java.lang.Exception implements Serializable

Class org.simtk.geometry3d.MatrixSizeMismatchException extends java.lang.RuntimeException implements Serializable

serialVersionUID: 1L

Class org.simtk.geometry3d.VectorSizeException extends java.lang.RuntimeException implements Serializable

serialVersionUID: 1L

Package org.simtk.gui

Class org.simtk.gui.ProgressDialogClass extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

progressPanel

ProgressPanel progressPanel

Class org.simtk.gui.ProgressPanel extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

throbber

Throbber throbber

startTime

java.util.Date startTime

timeLabel

javax.swing.JLabel timeLabel

cancelButton

javax.swing.JButton cancelButton

m_isCancelled

boolean m_isCancelled

Class org.simtk.gui.Throbber extends javax.swing.JLabel implements Serializable

serialVersionUID: 1L

Serialized Fields

icons

javax.swing.Icon[] icons

iconIndex

int iconIndex

Class org.simtk.gui.UndoableDialog extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

currentParameterState

ParameterSetModel currentParameterState

parameterHistory

java.util.Vector<E> parameterHistory

currentHistoryPosition

int currentHistoryPosition

undoButton

javax.swing.JButton undoButton

redoButton

javax.swing.JButton redoButton

closeButton

javax.swing.JButton closeButton

contentPane

javax.swing.JPanel contentPane

Package org.simtk.molecularstructure

Class org.simtk.molecularstructure.InsufficientAtomsException extends java.lang.Exception implements Serializable

Package org.simtk.molecularstructure.atom

Class org.simtk.molecularstructure.atom.AtomSet extends java.util.Vector<Atom> implements Serializable

Package org.simtk.molecularstructure.nucleicacid

Class org.simtk.molecularstructure.nucleicacid.Hairpin extends java.util.Vector implements Serializable

serialVersionUID: 1L

Package org.simtk.pdb

Class org.simtk.pdb.JLinkLabel extends javax.swing.JLabel implements Serializable

Serialized Fields

COLOR_NORMAL

java.awt.Color COLOR_NORMAL

COLOR_HOVER

java.awt.Color COLOR_HOVER

COLOR_ACTIVE

java.awt.Color COLOR_ACTIVE

COLOR_BG_NORMAL

java.awt.Color COLOR_BG_NORMAL

COLOR_BG_ACTIVE

java.awt.Color COLOR_BG_ACTIVE

mouseOutDefault

java.awt.Color mouseOutDefault

Class org.simtk.pdb.MoleculeAcquisitionMethodDialog extends javax.swing.JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

loadFileButton

javax.swing.JButton loadFileButton

webPDBButton

javax.swing.JButton webPDBButton

cancelButton

javax.swing.JButton cancelButton

idField

javax.swing.JTextField idField

bioUnitList

javax.swing.JComboBox bioUnitList

parent

java.awt.Frame parent

moleculeFileChooser

org.simtk.pdb.MoleculeFileChooser moleculeFileChooser

defaultPdbId

java.lang.String defaultPdbId

pdbId

java.lang.String pdbId

progressDialog

ProgressDialog progressDialog

loadPDBProcess

LoadPdbUrlProcess loadPDBProcess

progressManager

ProgressManager progressManager

fileLoadObservable

SimpleObservable fileLoadObservable

currentPath

java.lang.String currentPath

waitCursor

java.awt.Cursor waitCursor

defaultCursor

java.awt.Cursor defaultCursor

Package org.simtk.util

Class org.simtk.util.ProgrammerLogicProblem extends java.lang.RuntimeException implements Serializable

serialVersionUID: 1L