org.simtk.moleculargraphics.cartoon
Class BasePairRod

java.lang.Object
  org.simtk.moleculargraphics.cartoon.ActorCartoonClass
      org.simtk.moleculargraphics.cartoon.GlyphCartoon
          org.simtk.moleculargraphics.cartoon.CylinderCartoon
              org.simtk.moleculargraphics.cartoon.BasePairRod

All Implemented Interfaces:

ActorCartoon, BaseCartoon, ResidueHighlightListener

public class BasePairRod
extends CylinderCartoon

Author:

Christopher Bruns One fat cylinder per base pair, connecting the backbone positions of two nucleotides, colored by the nucleotide colors.

Field Summary

protected ColorScheme

colorScheme

Fields inherited from class org.simtk.moleculargraphics.cartoon.CylinderCartoon

cylinderRadius, cylinderSource, minLength

Fields inherited from class org.simtk.moleculargraphics.cartoon.GlyphCartoon

highlightFactor

Fields inherited from class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

actor, highlightActor, highlightMapper, highlightToonColors, invisibleColorScheme, isPopulated, mapper

Method Summary

void	addBasePair(BasePair basePair)
void	addMolecule(Molecule molecule)

Methods inherited from class org.simtk.moleculargraphics.cartoon.CylinderCartoon

addCylinder

Methods inherited from class org.simtk.moleculargraphics.cartoon.GlyphCartoon

colorByScalar, orientByNormal, scaleByNormal, scaleNone, setGlyphSource

Methods inherited from class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

colorToon, colorToon, getActor, getChemicalFromScalar, getColorIndex, getHighlightActor, getMapper, highlightResidue, highlightResidueByAtomScalars, highlightResidueByResidueScalars, isPopulated, unhighlightResidue, unhighlightResidueByAtomScalars, unhighlightResidueByResidueScalars, unhighlightResidues

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

colorScheme

protected ColorScheme colorScheme

Method Detail

addMolecule

public void addMolecule(Molecule molecule)

Specified by:

addMolecule in class GlyphCartoon

addBasePair

public void addBasePair(BasePair basePair)
                 throws InsufficientAtomsException

Throws:

InsufficientAtomsException