org.simtk.moleculargraphics.cartoon
Class ProteinCoil

java.lang.Object
  org.simtk.moleculargraphics.cartoon.ActorCartoonClass
      org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment
          org.simtk.moleculargraphics.cartoon.ProteinCoil

All Implemented Interfaces:

ActorCartoon, BaseCartoon, ResidueHighlightListener

public class ProteinCoil
extends ProteinRibbonSegment

Field Summary

Fields inherited from class org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment

lengthResolution

Fields inherited from class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

actor, highlightActor, highlightMapper, highlightToonColors, invisibleColorScheme, isPopulated, mapper

Constructor Summary

ProteinCoil(java.util.List<Residue> residues, double diameter, int startIndex, Spline3D positionSpline, Spline3D normalSpline)

Method Summary

protected void	createCoil(java.util.List<Residue> residues, double diameter, int startIndex, Spline3D positionSpline, Spline3D normalSpline)
protected void	createCoil(java.util.List<Vector3D> positions, java.util.List<Vector3D> normals, java.util.List<Chemical> objects, double diameter)
protected void	oldCreateCoil(java.util.List<Residue> residues, double diameter)

Methods inherited from class org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment

chainDirection, createExtrudedRibbon, createPolyLine, finishVtkPipeline, hBondNormal

Methods inherited from class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

colorToon, colorToon, getActor, getChemicalFromScalar, getColorIndex, getHighlightActor, getMapper, highlightResidue, highlightResidueByAtomScalars, highlightResidueByResidueScalars, isPopulated, unhighlightResidue, unhighlightResidueByAtomScalars, unhighlightResidueByResidueScalars, unhighlightResidues

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinCoil

public ProteinCoil(java.util.List<Residue> residues,
                   double diameter,
                   int startIndex,
                   Spline3D positionSpline,
                   Spline3D normalSpline)
            throws NoCartoonCreatedException

Throws:

NoCartoonCreatedException

Method Detail

createCoil

protected void createCoil(java.util.List<Residue> residues,
                          double diameter,
                          int startIndex,
                          Spline3D positionSpline,
                          Spline3D normalSpline)
                   throws NoCartoonCreatedException

Throws:

NoCartoonCreatedException

createCoil

protected void createCoil(java.util.List<Vector3D> positions,
                          java.util.List<Vector3D> normals,
                          java.util.List<Chemical> objects,
                          double diameter)

oldCreateCoil

protected void oldCreateCoil(java.util.List<Residue> residues,
                             double diameter)
                      throws NoCartoonCreatedException

Throws:

NoCartoonCreatedException