org.simtk.moleculargraphics.cartoon
Class ProteinHelix

java.lang.Object
  org.simtk.moleculargraphics.cartoon.ActorCartoonClass
      org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment
          org.simtk.moleculargraphics.cartoon.ProteinHelix

All Implemented Interfaces:

ActorCartoon, BaseCartoon, ResidueHighlightListener

public class ProteinHelix
extends ProteinRibbonSegment

Field Summary

Fields inherited from class org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment

lengthResolution

Fields inherited from class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

actor, highlightActor, highlightMapper, highlightToonColors, invisibleColorScheme, isPopulated, mapper

Constructor Summary

ProteinHelix(java.util.List<Residue> residues, double ribbonThickness, double helixWidth, int startIndex, Spline3D positionSpline, Spline3D normalSpline)

Method Summary

protected void	createAlphaHelix(java.util.List<Residue> residues, double ribbonThickness, double strandWidth, int startIndex, Spline3D positionSpline, Spline3D normalSpline)
protected void	createTaperedRibbon(java.util.List<Vector3D> positions, java.util.List<Vector3D> normals, java.util.List<Chemical> objects, double ribbonThickness, double ribbonWidth)
protected void	oldCreateAlphaHelix(java.util.List<Residue> residues, double ribbonThickness, double helixWidth)

Methods inherited from class org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment

chainDirection, createExtrudedRibbon, createPolyLine, finishVtkPipeline, hBondNormal

Methods inherited from class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

colorToon, colorToon, getActor, getChemicalFromScalar, getColorIndex, getHighlightActor, getMapper, highlightResidue, highlightResidueByAtomScalars, highlightResidueByResidueScalars, isPopulated, unhighlightResidue, unhighlightResidueByAtomScalars, unhighlightResidueByResidueScalars, unhighlightResidues

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinHelix

public ProteinHelix(java.util.List<Residue> residues,
                    double ribbonThickness,
                    double helixWidth,
                    int startIndex,
                    Spline3D positionSpline,
                    Spline3D normalSpline)
             throws NoCartoonCreatedException

Throws:

NoCartoonCreatedException

Method Detail

createTaperedRibbon

protected void createTaperedRibbon(java.util.List<Vector3D> positions,
                                   java.util.List<Vector3D> normals,
                                   java.util.List<Chemical> objects,
                                   double ribbonThickness,
                                   double ribbonWidth)

createAlphaHelix

protected void createAlphaHelix(java.util.List<Residue> residues,
                                double ribbonThickness,
                                double strandWidth,
                                int startIndex,
                                Spline3D positionSpline,
                                Spline3D normalSpline)
                         throws NoCartoonCreatedException

Throws:

NoCartoonCreatedException

oldCreateAlphaHelix

protected void oldCreateAlphaHelix(java.util.List<Residue> residues,
                                   double ribbonThickness,
                                   double helixWidth)
                            throws NoCartoonCreatedException

Throws:

NoCartoonCreatedException