org.simtk.molecularstructure.nucleicacid
Class BaseTriple

java.lang.Object
  org.simtk.molecularstructure.SecondaryStructureClass
      org.simtk.molecularstructure.nucleicacid.BaseTriple

All Implemented Interfaces:

SecondaryStructure

public class BaseTriple
extends SecondaryStructureClass

Nested Class Summary

Nested classes/interfaces inherited from class org.simtk.molecularstructure.SecondaryStructureClass

SecondaryStructureClass.SourceType

Field Summary

Fields inherited from class org.simtk.molecularstructure.SecondaryStructureClass

parentMolecules, residues, resLimit, sourceType

Constructor Summary

BaseTriple(BasePair bp1, BasePair bp2, BasePair bp3)

BaseTriple(java.util.Collection<BasePair> basepairs)

BaseTriple(java.util.Collection<BasePair> basepairs, java.lang.String source)

Method Summary

java.util.Collection<BasePair>

basePairs()

Methods inherited from class org.simtk.molecularstructure.SecondaryStructureClass

addMolecule, addResidue, getMolecules, getResidueIterator, getSource, residues, setMolecule, setSource

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BaseTriple

public BaseTriple(java.util.Collection<BasePair> basepairs)

BaseTriple

public BaseTriple(java.util.Collection<BasePair> basepairs,
                  java.lang.String source)

BaseTriple

public BaseTriple(BasePair bp1,
                  BasePair bp2,
                  BasePair bp3)

Method Detail

basePairs

public java.util.Collection<BasePair> basePairs()