Hierarchy For Package org.simtk.molecularstructure.nucleicacid

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • org.simtk.molecularstructure.nucleicacid.Hairpin
  • org.simtk.molecularstructure.MolecularClass (implements org.simtk.molecularstructure.Molecular)
    • org.simtk.molecularstructure.MoleculeClass (implements org.simtk.molecularstructure.Molecule)
      • org.simtk.molecularstructure.BiopolymerClass (implements org.simtk.molecularstructure.Biopolymer)
        • org.simtk.molecularstructure.nucleicacid.NucleicAcid
          • org.simtk.molecularstructure.nucleicacid.DNA
          • org.simtk.molecularstructure.nucleicacid.RNA
  • org.simtk.molecularstructure.ResidueTypeClass (implements org.simtk.molecularstructure.ResidueType)
    • org.simtk.molecularstructure.nucleicacid.Nucleotide
      • org.simtk.molecularstructure.nucleicacid.Purine
        • org.simtk.molecularstructure.nucleicacid.Adenylate
        • org.simtk.molecularstructure.nucleicacid.Guanylate
        • org.simtk.molecularstructure.nucleicacid.Inositate
      • org.simtk.molecularstructure.nucleicacid.Pyrimidine
        • org.simtk.molecularstructure.nucleicacid.Cytidylate
        • org.simtk.molecularstructure.nucleicacid.Thymidylate
        • org.simtk.molecularstructure.nucleicacid.Uridylate
  • org.simtk.molecularstructure.SecondaryStructureClass (implements org.simtk.molecularstructure.SecondaryStructure)
    • org.simtk.molecularstructure.nucleicacid.BasePair (implements java.lang.Iterable<T>)
    • org.simtk.molecularstructure.nucleicacid.BaseStack
    • org.simtk.molecularstructure.nucleicacid.BaseTriple
    • org.simtk.molecularstructure.nucleicacid.Duplex
    • org.simtk.molecularstructure.nucleicacid.Pseudoknot

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.simtk.molecularstructure.nucleicacid.BasePair.EdgeType
    • org.simtk.molecularstructure.nucleicacid.BasePair.BondOrientation