org.simtk.toon.secstruct
Class SecondaryStructureCanvas

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.simtk.toon.secstruct.SecondaryStructureCanvas

All Implemented Interfaces:

java.awt.event.ComponentListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, ResidueHighlightListener

public class SecondaryStructureCanvas
extends javax.swing.JPanel
implements ResidueHighlightListener, java.awt.event.MouseWheelListener, java.awt.event.MouseMotionListener, java.awt.event.MouseListener, java.awt.event.ComponentListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected double	characterDensity
protected SecondaryStructureDiagram	diagram
protected java.util.Map<java.awt.Font,java.lang.Double>	fontHeights
protected java.util.List<java.awt.Font>	fonts
protected java.util.Map<java.awt.Font,java.lang.Double>	fontWidths
protected ResidueHighlightBroadcaster	residueHighlightBroadcaster
protected org.simtk.toon.secstruct.SecondaryStructureCanvas.Transform2D	transform
protected java.util.Set<BasePair>	worstBasePairs

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SecondaryStructureCanvas(ResidueHighlightBroadcaster r)

Method Summary

void	componentHidden(java.awt.event.ComponentEvent event)
void	componentMoved(java.awt.event.ComponentEvent event)
void	componentResized(java.awt.event.ComponentEvent event)
void	componentShown(java.awt.event.ComponentEvent event)
protected Vector2D	getLabelCorner(java.awt.Graphics2D g2, java.lang.String label, Vector2D position, Vector2D direction)
java.awt.Dimension	getMaximumSize()
java.awt.Dimension	getMinimumSize()
java.awt.Dimension	getPreferredSize()
void	highlightResidue(Residue r, java.awt.Color c)
protected void	loadSStructViewFile(java.io.InputStream inputStream)
void	mouseClicked(java.awt.event.MouseEvent event)
void	mouseDragged(java.awt.event.MouseEvent event)
void	mouseEntered(java.awt.event.MouseEvent event)
void	mouseExited(java.awt.event.MouseEvent event)
void	mouseMoved(java.awt.event.MouseEvent event)
void	mousePressed(java.awt.event.MouseEvent event)
void	mouseReleased(java.awt.event.MouseEvent event)
void	mouseWheelMoved(java.awt.event.MouseWheelEvent event)
void	paint(java.awt.Graphics g)
void	setDiagram(SecondaryStructureDiagram diagram)
void	setMaximumSize(java.awt.Dimension d)
void	setMinimumSize(java.awt.Dimension d)
void	setPreferredSize(java.awt.Dimension d)
protected void	transformToBoundingBox(BoundingBox boundingBox)
protected void	translate(double transX, double transY)
void	unhighlightResidue(Residue r)
void	unhighlightResidues()
protected void	zoom(double zoomFactor)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setNextFocusableComponent, setOpaque, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

residueHighlightBroadcaster

protected ResidueHighlightBroadcaster residueHighlightBroadcaster

characterDensity

protected double characterDensity

fonts

protected java.util.List<java.awt.Font> fonts

fontHeights

protected java.util.Map<java.awt.Font,java.lang.Double> fontHeights

fontWidths

protected java.util.Map<java.awt.Font,java.lang.Double> fontWidths

diagram

protected SecondaryStructureDiagram diagram

transform

protected org.simtk.toon.secstruct.SecondaryStructureCanvas.Transform2D transform

worstBasePairs

protected java.util.Set<BasePair> worstBasePairs

Constructor Detail

SecondaryStructureCanvas

public SecondaryStructureCanvas(ResidueHighlightBroadcaster r)

Method Detail

componentHidden

public void componentHidden(java.awt.event.ComponentEvent event)

Specified by:

componentHidden in interface java.awt.event.ComponentListener

componentShown

public void componentShown(java.awt.event.ComponentEvent event)

Specified by:

componentShown in interface java.awt.event.ComponentListener

componentMoved

public void componentMoved(java.awt.event.ComponentEvent event)

Specified by:

componentMoved in interface java.awt.event.ComponentListener

componentResized

public void componentResized(java.awt.event.ComponentEvent event)

Specified by:

componentResized in interface java.awt.event.ComponentListener

setDiagram

public void setDiagram(SecondaryStructureDiagram diagram)

transformToBoundingBox

protected void transformToBoundingBox(BoundingBox boundingBox)

loadSStructViewFile

protected void loadSStructViewFile(java.io.InputStream inputStream)
                            throws java.io.IOException

Throws:

java.io.IOException

paint

public void paint(java.awt.Graphics g)

Overrides:

paint in class javax.swing.JComponent

getLabelCorner

protected Vector2D getLabelCorner(java.awt.Graphics2D g2,
                                  java.lang.String label,
                                  Vector2D position,
                                  Vector2D direction)

Parameters:

g2 - Graphics context

label - The text of the label

position - The known position of one edge of the label

direction - The general direction that the label should extend from the known edge

Returns:

position for lower left corner of label as used by Graphics.drawString()

highlightResidue

public void highlightResidue(Residue r,
                             java.awt.Color c)

Specified by:

highlightResidue in interface ResidueHighlightListener

unhighlightResidue

public void unhighlightResidue(Residue r)

Specified by:

unhighlightResidue in interface ResidueHighlightListener

unhighlightResidues

public void unhighlightResidues()

Specified by:

unhighlightResidues in interface ResidueHighlightListener

getMaximumSize

public java.awt.Dimension getMaximumSize()

Overrides:

getMaximumSize in class javax.swing.JComponent

getMinimumSize

public java.awt.Dimension getMinimumSize()

Overrides:

getMinimumSize in class javax.swing.JComponent

getPreferredSize

public java.awt.Dimension getPreferredSize()

Overrides:

getPreferredSize in class javax.swing.JComponent

setMaximumSize

public void setMaximumSize(java.awt.Dimension d)

Overrides:

setMaximumSize in class javax.swing.JComponent

setMinimumSize

public void setMinimumSize(java.awt.Dimension d)

Overrides:

setMinimumSize in class javax.swing.JComponent

setPreferredSize

public void setPreferredSize(java.awt.Dimension d)

Overrides:

setPreferredSize in class javax.swing.JComponent

zoom

protected void zoom(double zoomFactor)

translate

protected void translate(double transX,
                         double transY)

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent event)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent event)

Specified by:

mouseExited in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent event)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent event)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent event)

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mouseWheelMoved

public void mouseWheelMoved(java.awt.event.MouseWheelEvent event)

Specified by:

mouseWheelMoved in interface java.awt.event.MouseWheelListener

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent event)

Specified by:

mouseMoved in interface java.awt.event.MouseMotionListener

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent event)

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener