org.simtk.toon.secstruct
Interface SecondaryStructureDiagram

All Known Implementing Classes:

NussinovDiagram, SecondaryStructureDiagramClass

public interface SecondaryStructureDiagram

Method Summary

java.util.List<BasePairPosition>	basePairPositions()
java.util.List<BasePosition>	basePositions()
BoundingBox	getBoundingBox()
double	getConsecutiveBaseDistance()
java.util.List<NumberTick>	majorTicks()
java.util.List<NumberTick>	minorTicks()

Method Detail

basePositions

java.util.List<BasePosition> basePositions()

basePairPositions

java.util.List<BasePairPosition> basePairPositions()

majorTicks

java.util.List<NumberTick> majorTicks()

minorTicks

java.util.List<NumberTick> minorTicks()

getConsecutiveBaseDistance

double getConsecutiveBaseDistance()

getBoundingBox

BoundingBox getBoundingBox()