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• includeAllInterbodyBondsBetweenTwoBodies() : SimTK::DuMMForceFieldSubsystem
• includeAllInterbodyBondsForOneAtom() : SimTK::DuMMForceFieldSubsystem
• includeAllInterbodyBondsForOneBody() : SimTK::DuMMForceFieldSubsystem
• includeAllInterbodyBondsWithBothAtoms() : SimTK::DuMMForceFieldSubsystem
• includeAllNonbondAtomsForOneBody() : SimTK::DuMMForceFieldSubsystem
• includeNonbondAtom() : SimTK::DuMMForceFieldSubsystem
• Indium() : SimTK::Element::Indium
• inheritAtomNames() : SimTK::Compound
• inheritBondCenterNames() : SimTK::Compound
• inheritCompoundSynonyms() : SimTK::Compound
• initialize() : SimTK::Protein
• initializePopularBiotypes() : SimTK::Biotype
• insert() : SimTK::VoxelHash< T >
• instantiateBiotypes() : SimTK::TwoNMethylGuanidineGroup , SimTK::SodiumIon , SimTK::ChlorideIon , SimTK::PotassiumIon , SimTK::RubidiumIon , SimTK::CesiumIon , SimTK::MagnesiumIon , SimTK::CalciumIon , SimTK::ZincIon , SimTK::FivePrimeRnaHydroxylGroup , SimTK::LithiumIon , SimTK::ThreePrimeRnaPhosphateGroup , SimTK::FivePrimeRnaPhosphateGroup , SimTK::RnaPhosphodiesterLinkage , SimTK::ThreePrimeRnaHydroxylGroup
• Iodine() : SimTK::Element::Iodine
• Iridium() : SimTK::Element::Iridium
• Iron() : SimTK::Element::Iron
• isAngularMomentumRemovalDisabled() : SimTK::MassCenterMotionRemover
• isMassCenterCorrectionEnabled() : SimTK::MassCenterMotionRemover
• Isoleucine() : SimTK::AminoAcidResidue::Isoleucine
• isUsingMultithreadedComputation() : SimTK::DuMMForceFieldSubsystem
• isUsingOpenMM() : SimTK::DuMMForceFieldSubsystem
• isValidAtomClass() : SimTK::DuMMForceFieldSubsystem