Here is a list of all class members with links to the classes they belong to:
- a -
- addAcceptor()
: CustomHbondForce
- addAngle()
: CustomAngleForce
, AmoebaAngleForce
, AmoebaInPlaneAngleForce
, HarmonicAngleForce
- addBond()
: GBVIForce
, HarmonicBondForce
, AmoebaBondForce
, CustomBondForce
, CustomCompoundBondForce
- addComputedValue()
: CustomGBForce
- addComputeGlobal()
: CustomIntegrator
- addComputePerDof()
: CustomIntegrator
- addComputeSum()
: CustomIntegrator
- addConstrainPositions()
: CustomIntegrator
- addConstraint()
: System
- addConstrainVelocities()
: CustomIntegrator
- addDonor()
: CustomHbondForce
- addEnergyTerm()
: CustomGBForce
- addException()
: NonbondedForce
- addExclusion()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- addForce()
: System
- addFunction()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- addGlobalParameter()
: CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
, CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
- addGlobalVariable()
: CustomIntegrator
- addInteractionGroup()
: CustomNonbondedForce
- addMap()
: CMAPTorsionForce
- addMultipole()
: AmoebaMultipoleForce
- addOutOfPlaneBend()
: AmoebaOutOfPlaneBendForce
- addParticle()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
, System
, DrudeForce
, AmoebaGeneralizedKirkwoodForce
, AmoebaVdwForce
, AmoebaWcaDispersionForce
- addPerAcceptorParameter()
: CustomHbondForce
- addPerAngleParameter()
: CustomAngleForce
- addPerBondParameter()
: CustomBondForce
, CustomCompoundBondForce
- addPerDofVariable()
: CustomIntegrator
- addPerDonorParameter()
: CustomHbondForce
- addPerParticleParameter()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- addPerTorsionParameter()
: CustomTorsionForce
- addPiTorsion()
: AmoebaPiTorsionForce
- addScreenedPair()
: DrudeForce
- addStretchBend()
: AmoebaStretchBendForce
- addTabulatedFunction()
: CustomGBForce
, CustomCompoundBondForce
, CustomHbondForce
, CustomNonbondedForce
- addTorsion()
: CMAPTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
, CustomTorsionForce
- addTorsionTorsion()
: AmoebaTorsionTorsionForce
- addUpdateContextState()
: CustomIntegrator
- AmoebaAngleForce()
: AmoebaAngleForce
- AmoebaAngleForceImpl()
: AmoebaAngleForceImpl
- AmoebaBondForce()
: AmoebaBondForce
- AmoebaBondForceImpl()
: AmoebaBondForceImpl
- AmoebaGeneralizedKirkwoodForce()
: AmoebaGeneralizedKirkwoodForce
- AmoebaGeneralizedKirkwoodForceImpl()
: AmoebaGeneralizedKirkwoodForceImpl
- AmoebaInPlaneAngleForce()
: AmoebaInPlaneAngleForce
- AmoebaInPlaneAngleForceImpl()
: AmoebaInPlaneAngleForceImpl
- AmoebaMultipoleForce()
: AmoebaMultipoleForce
- AmoebaMultipoleForceImpl()
: AmoebaMultipoleForceImpl
- AmoebaOutOfPlaneBendForce()
: AmoebaOutOfPlaneBendForce
- AmoebaOutOfPlaneBendForceImpl()
: AmoebaOutOfPlaneBendForceImpl
- AmoebaPiTorsionForce()
: AmoebaPiTorsionForce
- AmoebaPiTorsionForceImpl()
: AmoebaPiTorsionForceImpl
- AmoebaStretchBendForce()
: AmoebaStretchBendForce
- AmoebaStretchBendForceImpl()
: AmoebaStretchBendForceImpl
- AmoebaTorsionTorsionForce()
: AmoebaTorsionTorsionForce
- AmoebaTorsionTorsionForceImpl()
: AmoebaTorsionTorsionForceImpl
- AmoebaVdwForce()
: AmoebaVdwForce
- AmoebaVdwForceImpl()
: AmoebaVdwForceImpl
- AmoebaWcaDispersionForce()
: AmoebaWcaDispersionForce
- AmoebaWcaDispersionForceImpl()
: AmoebaWcaDispersionForceImpl
- AndersenThermostat()
: AndersenThermostat
- AndersenThermostatImpl()
: AndersenThermostatImpl
- applyConstraints()
: ContextImpl
, Context
- applyVelocityConstraints()
: Context
, ContextImpl