Here is a list of all class members with links to the classes they belong to:

- s -

• serialize() : XmlSerializer
• setAcceptorParameters() : CustomHbondForce
• setAEwald() : AmoebaMultipoleForce
• setAmoebaGlobalAngleCubic() : AmoebaAngleForce
• setAmoebaGlobalAnglePentic() : AmoebaAngleForce
• setAmoebaGlobalAngleQuartic() : AmoebaAngleForce
• setAmoebaGlobalAngleSextic() : AmoebaAngleForce
• setAmoebaGlobalBondCubic() : AmoebaBondForce
• setAmoebaGlobalBondQuartic() : AmoebaBondForce
• setAmoebaGlobalInPlaneAngleCubic() : AmoebaInPlaneAngleForce
• setAmoebaGlobalInPlaneAnglePentic() : AmoebaInPlaneAngleForce
• setAmoebaGlobalInPlaneAngleQuartic() : AmoebaInPlaneAngleForce
• setAmoebaGlobalInPlaneAngleSextic() : AmoebaInPlaneAngleForce
• setAmoebaGlobalOutOfPlaneBendCubic() : AmoebaOutOfPlaneBendForce
• setAmoebaGlobalOutOfPlaneBendPentic() : AmoebaOutOfPlaneBendForce
• setAmoebaGlobalOutOfPlaneBendQuartic() : AmoebaOutOfPlaneBendForce
• setAmoebaGlobalOutOfPlaneBendSextic() : AmoebaOutOfPlaneBendForce
• setAngleParameters() : CustomAngleForce , HarmonicAngleForce , AmoebaAngleForce , AmoebaInPlaneAngleForce
• setApplyThermostat() : RPMDIntegrator
• setAwater() : AmoebaWcaDispersionForce
• setBondParameters() : CustomBondForce , CustomCompoundBondForce , GBVIForce , HarmonicBondForce , AmoebaBondForce
• setBornRadiusScalingMethod() : GBVIForce
• setComputedValueParameters() : CustomGBForce
• setConstraintParameters() : System
• setConstraintTolerance() : Integrator
• setCovalentMap() : AmoebaMultipoleForce
• setCutoff() : AmoebaVdwForce
• setCutoffDistance() : CustomGBForce , CustomHbondForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , NonbondedForce , AmoebaMultipoleForce
• setDefaultCollisionFrequency() : AndersenThermostat
• setDefaultPeriodicBoxVectors() : System
• setDefaultPressure() : MonteCarloAnisotropicBarostat , MonteCarloBarostat
• setDefaultTemperature() : AndersenThermostat
• setDispoff() : AmoebaWcaDispersionForce
• setDonorParameters() : CustomHbondForce
• setDrudeFriction() : DrudeLangevinIntegrator
• setDrudeTemperature() : DrudeLangevinIntegrator
• setEnergy() : State
• setEnergyFunction() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• setEnergyTermParameters() : CustomGBForce
• setEpsh() : AmoebaWcaDispersionForce
• setEpsilonCombiningRule() : AmoebaVdwForce
• setEpso() : AmoebaWcaDispersionForce
• setErrorTolerance() : VariableVerletIntegrator , VariableLangevinIntegrator
• setEwaldErrorTolerance() : NonbondedForce , AmoebaMultipoleForce
• setExceptionParameters() : NonbondedForce
• setExclusionParticles() : CustomGBForce , CustomHbondForce , CustomNonbondedForce
• setForceGroup() : Force
• setForces() : State
• setFrequency() : CMMotionRemover , MonteCarloAnisotropicBarostat , MonteCarloBarostat
• setFriction() : BrownianIntegrator , LangevinIntegrator , VariableLangevinIntegrator , DrudeLangevinIntegrator , RPMDIntegrator
• setFunctionParameters() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction
• setGlobalParameterDefaultValue() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• setGlobalParameterName() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , CustomTorsionForce
• setGlobalVariable() : CustomIntegrator
• setGlobalVariableByName() : CustomIntegrator
• setIncludeCavityTerm() : AmoebaGeneralizedKirkwoodForce
• setInteractionGroupParameters() : CustomNonbondedForce
• setKineticEnergyExpression() : CustomIntegrator
• setMapParameters() : CMAPTorsionForce
• setMinimizationErrorTolerance() : DrudeSCFIntegrator
• setMultipoleParameters() : AmoebaMultipoleForce
• setMutualInducedMaxIterations() : AmoebaMultipoleForce
• setMutualInducedTargetEpsilon() : AmoebaMultipoleForce
• setNonbondedMethod() : CustomGBForce , CustomHbondForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , NonbondedForce , AmoebaMultipoleForce , AmoebaVdwForce
• setOutOfPlaneBendParameters() : AmoebaOutOfPlaneBendForce
• setParameter() : Context , ContextImpl
• setParameters() : State
• setParticleExclusions() : AmoebaVdwForce
• setParticleMass() : System
• setParticleParameters() : CustomExternalForce , CustomGBForce , CustomNonbondedForce , GBSAOBCForce , NonbondedForce , DrudeForce , AmoebaGeneralizedKirkwoodForce , AmoebaWcaDispersionForce , AmoebaVdwForce , GBVIForce
• setParticles() : VirtualSite
• setPerAcceptorParameterName() : CustomHbondForce
• setPerAngleParameterName() : CustomAngleForce
• setPerBondParameterName() : CustomBondForce , CustomCompoundBondForce
• setPerDofVariable() : CustomIntegrator
• setPerDofVariableByName() : CustomIntegrator
• setPerDonorParameterName() : CustomHbondForce
• setPeriodicBoxVectors() : Context , ContextImpl , State
• setPerParticleParameterName() : CustomExternalForce , CustomGBForce , CustomNonbondedForce
• setPerTorsionParameterName() : CustomTorsionForce
• setPiTorsionParameters() : AmoebaPiTorsionForce
• setPlatformData() : ContextImpl
• setPmeGridDimensions() : AmoebaMultipoleForce
• setPMEParameters() : NonbondedForce
• setPolarizationType() : AmoebaMultipoleForce
• setPositions() : Context , ContextImpl , State , RPMDIntegrator
• setProbeRadius() : AmoebaGeneralizedKirkwoodForce
• setPropertyDefaultValue() : Platform
• setPropertyValue() : Platform
• setQuinticLowerLimitFactor() : GBVIForce
• setQuinticUpperBornRadiusLimit() : GBVIForce
• setRandomNumberSeed() : LangevinIntegrator , AndersenThermostat , MonteCarloBarostat , CustomIntegrator , MonteCarloAnisotropicBarostat , VariableLangevinIntegrator , DrudeLangevinIntegrator , RPMDIntegrator , BrownianIntegrator
• setReactionFieldDielectric() : NonbondedForce
• setReciprocalSpaceForceGroup() : NonbondedForce
• setRminh() : AmoebaWcaDispersionForce
• setRmino() : AmoebaWcaDispersionForce
• setScreenedPairParameters() : DrudeForce
• setShctd() : AmoebaWcaDispersionForce
• setSigmaCombiningRule() : AmoebaVdwForce
• setSlevy() : AmoebaWcaDispersionForce
• setSoluteDielectric() : AmoebaGeneralizedKirkwoodForce , GBVIForce , GBSAOBCForce
• setSolventDielectric() : GBSAOBCForce , AmoebaGeneralizedKirkwoodForce , GBVIForce
• setState() : Context
• setStepSize() : Integrator
• setStretchBendParameters() : AmoebaStretchBendForce
• setSurfaceAreaFactor() : AmoebaGeneralizedKirkwoodForce
• setSwitchingDistance() : NonbondedForce , CustomNonbondedForce
• setTemperature() : LangevinIntegrator , MonteCarloBarostat , DrudeLangevinIntegrator , RPMDIntegrator , MonteCarloAnisotropicBarostat , VariableLangevinIntegrator , BrownianIntegrator
• setTime() : Context , ContextImpl
• setTorsionParameters() : CMAPTorsionForce , PeriodicTorsionForce , RBTorsionForce , CustomTorsionForce
• setTorsionTorsionGrid() : AmoebaTorsionTorsionForce
• setTorsionTorsionParameters() : AmoebaTorsionTorsionForce
• setUseDispersionCorrection() : NonbondedForce , AmoebaVdwForce
• setUseLongRangeCorrection() : CustomNonbondedForce
• setUseSwitchingFunction() : CustomNonbondedForce , NonbondedForce
• setVelocities() : State , Context , ContextImpl , RPMDIntegrator
• setVelocitiesToTemperature() : Context
• setVirtualSite() : System
• SingleParticle : CustomGBForce
• State() : State
• StateBuilder() : State
• stateChanged() : RPMDIntegrator , DrudeLangevinIntegrator , Integrator , DrudeSCFIntegrator , CustomIntegrator
• step() : DrudeLangevinIntegrator , VariableVerletIntegrator , CustomIntegrator , Integrator , LangevinIntegrator , BrownianIntegrator , RPMDIntegrator , VariableLangevinIntegrator , DrudeSCFIntegrator , VerletIntegrator
• stepTo() : VariableVerletIntegrator , VariableLangevinIntegrator
• store() : ivec4 , fvec4 , ivec4 , ivec8 , fvec4 , ivec4 , fvec8
• supportsDoublePrecision() : Platform
• supportsKernels() : Platform
• syncThreads() : ThreadPool
• System() : System