- c -

• calcDispersionCorrection() : NonbondedForceImpl , AmoebaVdwForceImpl
• calcEwaldParameters() : NonbondedForceImpl
• calcForcesAndEnergy() : AndersenThermostatImpl , CustomAngleForceImpl , ForceImpl , AmoebaOutOfPlaneBendForceImpl , AmoebaPiTorsionForceImpl , GBSAOBCForceImpl , AmoebaStretchBendForceImpl , AmoebaTorsionTorsionForceImpl , CustomBondForceImpl , GBVIForceImpl , AmoebaVdwForceImpl , AmoebaWcaDispersionForceImpl , HarmonicAngleForceImpl , CMAPTorsionForceImpl , CustomCompoundBondForceImpl , HarmonicBondForceImpl , MonteCarloAnisotropicBarostatImpl , CustomExternalForceImpl , MonteCarloBarostatImpl , NonbondedForceImpl , CMMotionRemoverImpl , CustomGBForceImpl , PeriodicTorsionForceImpl , RBTorsionForceImpl , CustomHbondForceImpl , DrudeForceImpl , AmoebaAngleForceImpl , ContextImpl , CustomNonbondedForceImpl , AmoebaBondForceImpl , AmoebaGeneralizedKirkwoodForceImpl , CustomTorsionForceImpl , AmoebaInPlaneAngleForceImpl , AmoebaMultipoleForceImpl
• calcKineticEnergy() : ContextImpl
• calcLongRangeCorrection() : CustomNonbondedForceImpl
• calcMapDerivatives() : CMAPTorsionForceImpl
• calcParticleGroups() : AndersenThermostatImpl
• calcPMEParameters() : NonbondedForceImpl
• cleanup() : BrownianIntegrator , CustomIntegrator , Integrator , LangevinIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , RPMDIntegrator
• CMAPTorsionForce() : CMAPTorsionForce
• CMAPTorsionForceImpl() : CMAPTorsionForceImpl
• CMMotionRemover() : CMMotionRemover
• CMMotionRemoverImpl() : CMMotionRemoverImpl
• CollisionFrequency() : AndersenThermostat
• computeKineticEnergy() : VerletIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , RPMDIntegrator , BrownianIntegrator , CustomIntegrator , Integrator , LangevinIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator
• computeVirtualSites() : Context , ContextImpl
• Context() : Context
• contextCreated() : Platform
• contextDestroyed() : Platform
• ContextImpl() : ContextImpl
• Continuous1DFunction() : Continuous1DFunction
• Continuous2DFunction() : Continuous2DFunction
• Continuous3DFunction() : Continuous3DFunction
• Copy() : TabulatedFunction , Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction
• create2DNaturalSpline() : SplineFitter
• create3DNaturalSpline() : SplineFitter
• createCheckpoint() : Context , ContextImpl
• createExceptionsFromBonds() : NonbondedForce
• createExclusionsFromBonds() : CustomNonbondedForce
• createImpl() : AmoebaMultipoleForce , CMMotionRemover , CustomExternalForce , CustomTorsionForce , AmoebaStretchBendForce , PeriodicTorsionForce , RBTorsionForce , CustomHbondForce , AmoebaWcaDispersionForce , CustomCompoundBondForce , HarmonicAngleForce , AndersenThermostat , HarmonicBondForce , MonteCarloAnisotropicBarostat , AmoebaAngleForce , NonbondedForce , GBSAOBCForce , GBVIForce , AmoebaBondForce , CustomAngleForce , AmoebaPiTorsionForce , CustomBondForce , CustomNonbondedForce , CustomGBForce , AmoebaVdwForce , AmoebaTorsionTorsionForce , MonteCarloBarostat , AmoebaGeneralizedKirkwoodForce , CMAPTorsionForce , DrudeForce , AmoebaOutOfPlaneBendForce , AmoebaInPlaneAngleForce , Force
• createKernel() : Platform
• createKernelImpl() : KernelFactory
• createNaturalSpline() : SplineFitter
• createPeriodicSpline() : SplineFitter
• cross() : Vec3
• CustomAngleForce() : CustomAngleForce
• CustomAngleForceImpl() : CustomAngleForceImpl
• CustomBondForce() : CustomBondForce
• CustomBondForceImpl() : CustomBondForceImpl
• CustomCompoundBondForce() : CustomCompoundBondForce
• CustomCompoundBondForceImpl() : CustomCompoundBondForceImpl
• CustomExternalForce() : CustomExternalForce
• CustomExternalForceImpl() : CustomExternalForceImpl
• CustomGBForce() : CustomGBForce
• CustomGBForceImpl() : CustomGBForceImpl
• CustomHbondForce() : CustomHbondForce
• CustomHbondForceImpl() : CustomHbondForceImpl
• CustomIntegrator() : CustomIntegrator
• CustomNonbondedForce() : CustomNonbondedForce
• CustomNonbondedForceImpl() : CustomNonbondedForceImpl
• CustomTorsionForce() : CustomTorsionForce
• CustomTorsionForceImpl() : CustomTorsionForceImpl