- g -
- GBSAOBCForce()
: GBSAOBCForce
- GBSAOBCForceImpl()
: GBSAOBCForceImpl
- GBVIForce()
: GBVIForce
- GBVIForceImpl()
: GBVIForceImpl
- getAcceptorParameters()
: CustomHbondForce
- getAEwald()
: AmoebaMultipoleForce
- getAmoebaGlobalAngleCubic()
: AmoebaAngleForce
- getAmoebaGlobalAnglePentic()
: AmoebaAngleForce
- getAmoebaGlobalAngleQuartic()
: AmoebaAngleForce
- getAmoebaGlobalAngleSextic()
: AmoebaAngleForce
- getAmoebaGlobalBondCubic()
: AmoebaBondForce
- getAmoebaGlobalBondQuartic()
: AmoebaBondForce
- getAmoebaGlobalInPlaneAngleCubic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAnglePentic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleQuartic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleSextic()
: AmoebaInPlaneAngleForce
- getAmoebaGlobalOutOfPlaneBendCubic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendPentic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendQuartic()
: AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendSextic()
: AmoebaOutOfPlaneBendForce
- getAngleParameters()
: CustomAngleForce
, HarmonicAngleForce
, AmoebaAngleForce
, AmoebaInPlaneAngleForce
- getApplyThermostat()
: RPMDIntegrator
- getAs()
: Kernel
- getAwater()
: AmoebaWcaDispersionForce
- getBondedParticles()
: AmoebaBondForceImpl
, CustomBondForceImpl
, ForceImpl
, HarmonicBondForceImpl
- getBondParameters()
: CustomBondForce
, CustomCompoundBondForce
, GBVIForce
, HarmonicBondForce
, AmoebaBondForce
- getBondsFromForces()
: GBVIForceImpl
- getBornRadiusScalingMethod()
: GBVIForce
- getComputationStep()
: CustomIntegrator
- getComputedValueParameters()
: CustomGBForce
- getConstraintParameters()
: System
- getConstraintTolerance()
: Integrator
- getContextImpl()
: Force
, Platform
- getContractions()
: RPMDIntegrator
- getCovalentDegree()
: AmoebaMultipoleForceImpl
- getCovalentMap()
: AmoebaMultipoleForce
- getCovalentMaps()
: AmoebaMultipoleForce
- getCovalentRange()
: AmoebaMultipoleForceImpl
- getCutoff()
: AmoebaVdwForce
- getCutoffDistance()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
, AmoebaMultipoleForce
- getDefaultCollisionFrequency()
: AndersenThermostat
- getDefaultParameters()
: CustomAngleForceImpl
, CustomBondForceImpl
, CustomCompoundBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomHbondForceImpl
, CustomNonbondedForceImpl
, CustomTorsionForceImpl
, ForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, MonteCarloAnisotropicBarostatImpl
, MonteCarloBarostatImpl
, NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
, DrudeForceImpl
, AmoebaAngleForceImpl
, AmoebaBondForceImpl
, AmoebaGeneralizedKirkwoodForceImpl
, AmoebaInPlaneAngleForceImpl
, AmoebaMultipoleForceImpl
, AmoebaOutOfPlaneBendForceImpl
, AmoebaPiTorsionForceImpl
, AmoebaStretchBendForceImpl
, AmoebaTorsionTorsionForceImpl
, AmoebaVdwForceImpl
, AmoebaWcaDispersionForceImpl
, AndersenThermostatImpl
, CMAPTorsionForceImpl
, CMMotionRemoverImpl
- getDefaultPeriodicBoxVectors()
: System
- getDefaultPluginsDirectory()
: Platform
- getDefaultPressure()
: MonteCarloAnisotropicBarostat
, MonteCarloBarostat
- getDefaultTemperature()
: AndersenThermostat
- getDispoff()
: AmoebaWcaDispersionForce
- getDonorParameters()
: CustomHbondForce
- getDrudeFriction()
: DrudeLangevinIntegrator
- getDrudeTemperature()
: DrudeLangevinIntegrator
- getElectrostaticPotential()
: AmoebaMultipoleForce
, AmoebaMultipoleForceImpl
- getEnergyFunction()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- getEnergyTermParameters()
: CustomGBForce
- getEpsh()
: AmoebaWcaDispersionForce
- getEpsilonCombiningRule()
: AmoebaVdwForce
- getEpso()
: AmoebaWcaDispersionForce
- getErrorTolerance()
: VariableLangevinIntegrator
, VariableVerletIntegrator
- getEwaldErrorTolerance()
: NonbondedForce
, AmoebaMultipoleForce
- getExceptionParameters()
: NonbondedForce
- getExclusionParticles()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getForce()
: System
- getForceGroup()
: Force
- getForceImpls()
: ContextImpl
- getForces()
: ContextImpl
, State
- getFrequency()
: CMMotionRemover
, MonteCarloAnisotropicBarostat
, MonteCarloBarostat
- getFriction()
: BrownianIntegrator
, LangevinIntegrator
, VariableLangevinIntegrator
, DrudeLangevinIntegrator
, RPMDIntegrator
- getFunctionParameters()
: CustomCompoundBondForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, Continuous1DFunction
, Continuous2DFunction
, Continuous3DFunction
, Discrete1DFunction
, Discrete2DFunction
, Discrete3DFunction
- getGlobalParameterDefaultValue()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalParameterName()
: CustomAngleForce
, CustomBondForce
, CustomCompoundBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
- getGlobalVariable()
: CustomIntegrator
- getGlobalVariableName()
: CustomIntegrator
- getImpl()
: Kernel
- getImplInContext()
: Force
- getIncludeCavityTerm()
: AmoebaGeneralizedKirkwoodForce
- getInducedDipoles()
: AmoebaMultipoleForce
, AmoebaMultipoleForceImpl
- getIntegrator()
: Context
, ContextImpl
- getInteractionGroupParameters()
: CustomNonbondedForce
- getKernel()
: AmoebaGeneralizedKirkwoodForceImpl
- getKernelNames()
: BrownianIntegrator
, CustomIntegrator
, Integrator
, AndersenThermostatImpl
, CMAPTorsionForceImpl
, CMMotionRemoverImpl
, CustomAngleForceImpl
, CustomBondForceImpl
, CustomCompoundBondForceImpl
, CustomExternalForceImpl
, CustomGBForceImpl
, CustomHbondForceImpl
, CustomNonbondedForceImpl
, CustomTorsionForceImpl
, ForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, HarmonicAngleForceImpl
, HarmonicBondForceImpl
, MonteCarloAnisotropicBarostatImpl
, MonteCarloBarostatImpl
, NonbondedForceImpl
, PeriodicTorsionForceImpl
, RBTorsionForceImpl
, LangevinIntegrator
, VariableLangevinIntegrator
, VariableVerletIntegrator
, VerletIntegrator
, DrudeLangevinIntegrator
, DrudeSCFIntegrator
, DrudeForceImpl
, RPMDIntegrator
, AmoebaAngleForceImpl
, AmoebaBondForceImpl
, AmoebaGeneralizedKirkwoodForceImpl
, AmoebaInPlaneAngleForceImpl
, AmoebaMultipoleForceImpl
, AmoebaOutOfPlaneBendForceImpl
, AmoebaPiTorsionForceImpl
, AmoebaStretchBendForceImpl
, AmoebaTorsionTorsionForceImpl
, AmoebaVdwForceImpl
, AmoebaWcaDispersionForceImpl
- getKineticEnergy()
: State
- getKineticEnergyExpression()
: CustomIntegrator
- getLastForceGroups()
: ContextImpl
- getLocalPosition()
: LocalCoordinatesSite
- getMapParameters()
: CMAPTorsionForce
- getMaximumDispersionEnergy()
: AmoebaWcaDispersionForceImpl
- getMinimizationErrorTolerance()
: DrudeSCFIntegrator
- getMolecules()
: Context
, ContextImpl
- getMultipoleParameters()
: AmoebaMultipoleForce
- getMutualInducedMaxIterations()
: AmoebaMultipoleForce
- getMutualInducedTargetEpsilon()
: AmoebaMultipoleForce
- getName()
: Kernel
, KernelImpl
, Platform
- getNonbondedMethod()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, NonbondedForce
, AmoebaMultipoleForce
, AmoebaVdwForce
- getNumAcceptors()
: CustomHbondForce
- getNumAngles()
: CustomAngleForce
, HarmonicAngleForce
, AmoebaAngleForce
, AmoebaInPlaneAngleForce
- getNumBonds()
: GBVIForce
, CustomBondForce
, CustomCompoundBondForce
, HarmonicBondForce
, AmoebaBondForce
- getNumComputations()
: CustomIntegrator
- getNumComputedValues()
: CustomGBForce
- getNumConstraints()
: System
- getNumCopies()
: RPMDIntegrator
- getNumDonors()
: CustomHbondForce
- getNumEnergyTerms()
: CustomGBForce
- getNumExceptions()
: NonbondedForce
- getNumExclusions()
: CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
- getNumForces()
: System
- getNumFunctions()
: CustomCompoundBondForce
, CustomGBForce
, CustomNonbondedForce
, CustomHbondForce
- getNumGlobalParameters()
: CustomAngleForce
, CustomBondForce
, CustomExternalForce
, CustomGBForce
, CustomHbondForce
, CustomNonbondedForce
, CustomTorsionForce
, CustomCompoundBondForce
- getNumGlobalVariables()
: CustomIntegrator
- getNumInteractionGroups()
: CustomNonbondedForce
- getNumMaps()
: CMAPTorsionForce
- getNumMultipoles()
: AmoebaMultipoleForce
- getNumOutOfPlaneBends()
: AmoebaOutOfPlaneBendForce
- getNumParticles()
: CustomExternalForce
, CustomNonbondedForce
, GBSAOBCForce
, GBVIForce
, System
, VirtualSite
, DrudeForce
, AmoebaGeneralizedKirkwoodForce
, AmoebaVdwForce
, AmoebaWcaDispersionForce
, NonbondedForce
, CustomGBForce
- getNumParticlesPerBond()
: CustomCompoundBondForce
- getNumPerAcceptorParameters()
: CustomHbondForce
- getNumPerAngleParameters()
: CustomAngleForce
- getNumPerBondParameters()
: CustomBondForce
, CustomCompoundBondForce
- getNumPerDofVariables()
: CustomIntegrator
- getNumPerDonorParameters()
: CustomHbondForce
- getNumPerParticleParameters()
: CustomNonbondedForce
, CustomExternalForce
, CustomGBForce
- getNumPerTorsionParameters()
: CustomTorsionForce
- getNumPiTorsions()
: AmoebaPiTorsionForce
- getNumPlatforms()
: Platform
- getNumScreenedPairs()
: DrudeForce
- getNumStretchBends()
: AmoebaStretchBendForce
- getNumTabulatedFunctions()
: CustomCompoundBondForce
, CustomGBForce
, CustomNonbondedForce
, CustomHbondForce
- getNumThreads()
: ThreadPool
- getNumTorsions()
: CMAPTorsionForce
, PeriodicTorsionForce
, RBTorsionForce
, CustomTorsionForce
- getNumTorsionTorsionGrids()
: AmoebaTorsionTorsionForce
- getNumTorsionTorsions()
: AmoebaTorsionTorsionForce
- getOpenMMVersion()
: Platform
- getOriginWeights()
: LocalCoordinatesSite
- getOutOfPlaneBendParameters()
: AmoebaOutOfPlaneBendForce
- getOwner()
: CustomCompoundBondForceImpl
, AmoebaVdwForceImpl
, HarmonicAngleForceImpl
, AmoebaOutOfPlaneBendForceImpl
, CustomNonbondedForceImpl
, AmoebaBondForceImpl
, CustomExternalForceImpl
, CustomBondForceImpl
, PeriodicTorsionForceImpl
, HarmonicBondForceImpl
, ForceImpl
, AndersenThermostatImpl
, CMAPTorsionForceImpl
, CMMotionRemoverImpl
, ContextImpl
, CustomGBForceImpl
, CustomTorsionForceImpl
, CustomHbondForceImpl
, CustomAngleForceImpl
, GBSAOBCForceImpl
, GBVIForceImpl
, MonteCarloAnisotropicBarostatImpl
, RBTorsionForceImpl
, AmoebaAngleForceImpl
, AmoebaGeneralizedKirkwoodForceImpl
, AmoebaPiTorsionForceImpl
, AmoebaStretchBendForceImpl
, AmoebaTorsionTorsionForceImpl
, AmoebaWcaDispersionForceImpl
, MonteCarloBarostatImpl
, NonbondedForceImpl
, DrudeForceImpl
, AmoebaInPlaneAngleForceImpl
, AmoebaMultipoleForceImpl
- getParameter()
: ContextImpl
, Context
- getParameters()
: ContextImpl
, State
- getParticle()
: VirtualSite
- getParticleExclusions()
: AmoebaVdwForce
- getParticleMass()
: System
- getParticleParameters()
: DrudeForce
, CustomExternalForce
, GBVIForce
, NonbondedForce
, AmoebaVdwForce
, CustomNonbondedForce
, CustomGBForce
, GBSAOBCForce
, AmoebaGeneralizedKirkwoodForce
, AmoebaWcaDispersionForce
- getPerAcceptorParameterName()
: CustomHbondForce
- getPerAngleParameterName()
: CustomAngleForce
- getPerBondParameterName()
: CustomBondForce
, CustomCompoundBondForce
- getPerDofVariable()
: CustomIntegrator
- getPerDofVariableName()
: CustomIntegrator
- getPerDonorParameterName()
: CustomHbondForce
- getPeriodicBoxVectors()
: State
, ContextImpl
- getPeriodicBoxVolume()
: State
- getPerParticleParameterName()
: CustomExternalForce
, CustomGBForce
, CustomNonbondedForce
- getPerTorsionParameterName()
: CustomTorsionForce
- getPiTorsionParameters()
: AmoebaPiTorsionForce
- getPlatform()
: Platform
, KernelImpl
, Context
, ContextImpl
, Context
- getPlatformByName()
: Platform
- getPlatformData()
: ContextImpl
- getPmeBSplineOrder()
: AmoebaMultipoleForce
- getPmeGridDimensions()
: AmoebaMultipoleForce
- getPMEParameters()
: NonbondedForce
- getPolarizationType()
: AmoebaMultipoleForce
- getPositions()
: ContextImpl
, State
- getPotentialEnergy()
: State
- getProbeRadius()
: AmoebaGeneralizedKirkwoodForce
- getPropertyDefaultValue()
: Platform
- getPropertyNames()
: Platform
- getPropertyValue()
: Platform
- getQuinticLowerLimitFactor()
: GBVIForce
- getQuinticUpperBornRadiusLimit()
: GBVIForce
- getRandomNumberSeed()
: AndersenThermostat
, LangevinIntegrator
, RPMDIntegrator
, CustomIntegrator
, MonteCarloAnisotropicBarostat
, DrudeLangevinIntegrator
, MonteCarloBarostat
, VariableLangevinIntegrator
, BrownianIntegrator
- getReactionFieldDielectric()
: NonbondedForce
- getReciprocalSpaceForceGroup()
: NonbondedForce
- getRminh()
: AmoebaWcaDispersionForce
- getRmino()
: AmoebaWcaDispersionForce
- getScaleX()
: MonteCarloAnisotropicBarostat
- getScaleY()
: MonteCarloAnisotropicBarostat
- getScaleZ()
: MonteCarloAnisotropicBarostat
- getScreenedPairParameters()
: DrudeForce
- getShctd()
: AmoebaWcaDispersionForce
- getSigmaCombiningRule()
: AmoebaVdwForce
- getSlevy()
: AmoebaWcaDispersionForce
- getSoluteDielectric()
: GBSAOBCForce
, GBVIForce
, AmoebaGeneralizedKirkwoodForce
- getSolventDielectric()
: GBSAOBCForce
, GBVIForce
, AmoebaGeneralizedKirkwoodForce
- getSpeed()
: Platform
- getState()
: RPMDIntegrator
, Context
, State
- getStepSize()
: Integrator
- getStretchBendParameters()
: AmoebaStretchBendForce
- getSurfaceAreaFactor()
: AmoebaGeneralizedKirkwoodForce
- getSwitchingDistance()
: NonbondedForce
, CustomNonbondedForce
- getSystem()
: Context
, ContextImpl
- getSystemMultipoleMoments()
: AmoebaMultipoleForce
, AmoebaMultipoleForceImpl
- getTabulatedFunction()
: CustomNonbondedForce
, CustomHbondForce
, CustomCompoundBondForce
, CustomNonbondedForce
, CustomHbondForce
, CustomCompoundBondForce
, CustomGBForce
- getTabulatedFunctionName()
: CustomNonbondedForce
, CustomGBForce
, CustomHbondForce
, CustomCompoundBondForce
- getTemperature()
: BrownianIntegrator
, RPMDIntegrator
, MonteCarloBarostat
, DrudeLangevinIntegrator
, VariableLangevinIntegrator
, LangevinIntegrator
, MonteCarloAnisotropicBarostat
- getTime()
: ContextImpl
, State
- getTorsionParameters()
: PeriodicTorsionForce
, CustomTorsionForce
, RBTorsionForce
, CMAPTorsionForce
- getTorsionTorsionGrid()
: AmoebaTorsionTorsionForce
- getTorsionTorsionParameters()
: AmoebaTorsionTorsionForce
- getTotalEnergy()
: RPMDIntegrator
- getTotalMaximumDispersionEnergy()
: AmoebaWcaDispersionForceImpl
- getUseDispersionCorrection()
: AmoebaVdwForce
, NonbondedForce
- getUseLongRangeCorrection()
: CustomNonbondedForce
- getUseSwitchingFunction()
: NonbondedForce
, CustomNonbondedForce
- getVelocities()
: State
, ContextImpl
- getVirtualSite()
: System
- getWeight()
: TwoParticleAverageSite
, ThreeParticleAverageSite
- getWeight12()
: OutOfPlaneSite
- getWeight13()
: OutOfPlaneSite
- getWeightCross()
: OutOfPlaneSite
- getXWeights()
: LocalCoordinatesSite
- getYWeights()
: LocalCoordinatesSite