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API
4.5.1
For C++ developers
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Implementation of a two state (activation and fiber-length) Muscle model by Thelen 2003. This a complete rewrite of a previous implementation (present in OpenSim 2.4 and earlier) contained numerous errors.
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OpenSim Properties, Sockets, Outputs, Inputs | |
Properties (single-value) | |
double | FmaxTendonStrain |
"tendon strain at maximum isometric muscle force" More... | |
double | FmaxMuscleStrain |
"passive muscle strain at maximum isometric muscle force" More... | |
double | KshapeActive |
"shape factor for Gaussian active muscle force-length relationship" More... | |
double | KshapePassive |
"exponential shape factor for passive force-length relationship" More... | |
double | Af |
"force-velocity shape factor" More... | |
double | Flen |
"maximum normalized lengthening force" More... | |
double | fv_linear_extrap_threshold |
"fv threshold where linear extrapolation is used" More... | |
double | maximum_pennation_angle |
"Maximum pennation angle, in radians" More... | |
double | activation_time_constant |
"Activation time constant, in seconds" More... | |
double | deactivation_time_constant |
"Deactivation time constant, in seconds" More... | |
double | minimum_activation |
"Lower bound on activation" More... | |
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double | default_activation |
"Assumed activation level if none is assigned." More... | |
double | default_fiber_length |
"Assumed fiber length, unless otherwise assigned." More... | |
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double | max_isometric_force |
"Maximum isometric force that the fibers can generate" More... | |
double | optimal_fiber_length |
"Optimal length of the muscle fibers" More... | |
double | tendon_slack_length |
"Resting length of the tendon" More... | |
double | pennation_angle_at_optimal |
"Angle between tendon and fibers at optimal fiber length expressed in radians" More... | |
double | max_contraction_velocity |
"Maximum contraction velocity of the fibers, in optimal fiberlengths/second" More... | |
bool | ignore_tendon_compliance |
"Compute muscle dynamics ignoring tendon compliance. Tendon is assumed to be rigid." More... | |
bool | ignore_activation_dynamics |
"Compute muscle dynamics ignoring activation dynamics. Activation is equivalent to excitation." More... | |
double | excitation |
Provides the value of getExcitation() and is available at stage SimTK::Stage::Dynamics . More... | |
double | activation |
Provides the value of getActivation() and is available at stage SimTK::Stage::Dynamics . More... | |
double | fiber_length |
Provides the value of getFiberLength() and is available at stage SimTK::Stage::Position . More... | |
double | pennation_angle |
Provides the value of getPennationAngle() and is available at stage SimTK::Stage::Position . More... | |
double | cos_pennation_angle |
Provides the value of getCosPennationAngle() and is available at stage SimTK::Stage::Position . More... | |
double | tendon_length |
Provides the value of getTendonLength() and is available at stage SimTK::Stage::Position . More... | |
double | normalized_fiber_length |
Provides the value of getNormalizedFiberLength() and is available at stage SimTK::Stage::Position . More... | |
double | fiber_length_along_tendon |
Provides the value of getFiberLengthAlongTendon() and is available at stage SimTK::Stage::Position . More... | |
double | tendon_strain |
Provides the value of getTendonStrain() and is available at stage SimTK::Stage::Position . More... | |
double | passive_force_multiplier |
Provides the value of getPassiveForceMultiplier() and is available at stage SimTK::Stage::Position . More... | |
double | active_force_length_multiplier |
Provides the value of getActiveForceLengthMultiplier() and is available at stage SimTK::Stage::Position . More... | |
double | fiber_velocity |
Provides the value of getFiberVelocity() and is available at stage SimTK::Stage::Velocity . More... | |
double | normalized_fiber_velocity |
Provides the value of getNormalizedFiberVelocity() and is available at stage SimTK::Stage::Velocity . More... | |
double | fiber_velocity_along_tendon |
Provides the value of getFiberVelocityAlongTendon() and is available at stage SimTK::Stage::Velocity . More... | |
double | tendon_velocity |
Provides the value of getTendonVelocity() and is available at stage SimTK::Stage::Velocity . More... | |
double | force_velocity_multiplier |
Provides the value of getForceVelocityMultiplier() and is available at stage SimTK::Stage::Velocity . More... | |
double | pennation_angular_velocity |
Provides the value of getPennationAngularVelocity() and is available at stage SimTK::Stage::Velocity . More... | |
double | fiber_force |
Provides the value of getFiberForce() and is available at stage SimTK::Stage::Dynamics . More... | |
double | fiber_force_along_tendon |
Provides the value of getFiberForceAlongTendon() and is available at stage SimTK::Stage::Dynamics . More... | |
double | active_fiber_force |
Provides the value of getActiveFiberForce() and is available at stage SimTK::Stage::Dynamics . More... | |
double | passive_fiber_force |
Provides the value of getPassiveFiberForce() and is available at stage SimTK::Stage::Dynamics . More... | |
double | active_fiber_force_along_tendon |
Provides the value of getActiveFiberForceAlongTendon() and is available at stage SimTK::Stage::Dynamics . More... | |
double | passive_fiber_force_along_tendon |
Provides the value of getPassiveFiberForceAlongTendon() and is available at stage SimTK::Stage::Dynamics . More... | |
double | tendon_force |
Provides the value of getTendonForce() and is available at stage SimTK::Stage::Dynamics . More... | |
double | fiber_stiffness |
Provides the value of getFiberStiffness() and is available at stage SimTK::Stage::Dynamics . More... | |
double | fiber_stiffness_along_tendon |
Provides the value of getFiberStiffnessAlongTendon() and is available at stage SimTK::Stage::Dynamics . More... | |
double | tendon_stiffness |
Provides the value of getTendonStiffness() and is available at stage SimTK::Stage::Dynamics . More... | |
double | muscle_stiffness |
Provides the value of getMuscleStiffness() and is available at stage SimTK::Stage::Dynamics . More... | |
double | fiber_active_power |
Provides the value of getFiberActivePower() and is available at stage SimTK::Stage::Dynamics . More... | |
double | fiber_passive_power |
Provides the value of getFiberPassivePower() and is available at stage SimTK::Stage::Dynamics . More... | |
double | tendon_power |
Provides the value of getTendonPower() and is available at stage SimTK::Stage::Dynamics . More... | |
double | muscle_power |
Provides the value of getMusclePower() and is available at stage SimTK::Stage::Dynamics . More... | |
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AbstractGeometryPath | path |
"The path of the actuator which defines length and lengthening speed." More... | |
double | optimal_force |
"The maximum force this actuator can produce." More... | |
double | tension |
Provides the value of computeActuation() and is available at stage SimTK::Stage::Acceleration . More... | |
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double | min_control |
"Minimum allowed value for control signal. Used primarily when solving " "for control values." More... | |
double | max_control |
"Maximum allowed value for control signal. Used primarily when solving " "for control values." More... | |
double | actuation |
Provides the value of getActuation() and is available at stage SimTK::Stage::Velocity . More... | |
double | speed |
Provides the value of getSpeed() and is available at stage SimTK::Stage::Velocity . More... | |
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double | power |
Provides the value of getPower() and is available at stage SimTK::Stage::Dynamics . More... | |
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bool | appliesForce |
"Flag indicating whether the force is applied or not. If true the force" "is applied to the MultibodySystem otherwise the force is not applied." "NOTE: Prior to OpenSim 4.0, this behavior was controlled by the " "'isDisabled' property, where 'true' meant that force was not being " "applied. Thus, if 'isDisabled' is true, then 'appliesForce` is false." More... | |
double | potential_energy |
Provides the value of computePotentialEnergy() and is available at stage SimTK::Stage::Velocity . More... | |
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Component | components |
"List of components that this component owns and serializes." More... | |
Public Member Functions | |
Thelen2003Muscle () | |
Thelen2003Muscle (const std::string &aName, double aMaxIsometricForce, double aOptimalFiberLength, double aTendonSlackLength, double aPennationAngle) | |
double | getMinimumFiberLength () const |
More... | |
const MuscleFirstOrderActivationDynamicModel & | getActivationModel () const |
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const MuscleFixedWidthPennationModel & | getPennationModel () const |
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void | printCurveToCSVFile (const CurveType ctype, const std::string &path) const |
double | computeActuation (const SimTK::State &s) const override |
Actuator interface for a muscle computes the tension in the muscle and applied by the tendon to bones (i.e. More... | |
void | computeInitialFiberEquilibrium (SimTK::State &s) const override |
Compute initial fiber length (velocity) such that muscle fiber and tendon are in static equilibrium and update the state. More... | |
Property-related functions | |
const double & | get_FmaxTendonStrain () const |
Get the value of the FmaxTendonStrain property. More... | |
double & | upd_FmaxTendonStrain () |
Get a writable reference to the FmaxTendonStrain property. More... | |
void | set_FmaxTendonStrain (const double &value) |
Set the value of the FmaxTendonStrain property. More... | |
const double & | get_FmaxMuscleStrain () const |
Get the value of the FmaxMuscleStrain property. More... | |
double & | upd_FmaxMuscleStrain () |
Get a writable reference to the FmaxMuscleStrain property. More... | |
void | set_FmaxMuscleStrain (const double &value) |
Set the value of the FmaxMuscleStrain property. More... | |
const double & | get_KshapeActive () const |
Get the value of the KshapeActive property. More... | |
double & | upd_KshapeActive () |
Get a writable reference to the KshapeActive property. More... | |
void | set_KshapeActive (const double &value) |
Set the value of the KshapeActive property. More... | |
const double & | get_KshapePassive () const |
Get the value of the KshapePassive property. More... | |
double & | upd_KshapePassive () |
Get a writable reference to the KshapePassive property. More... | |
void | set_KshapePassive (const double &value) |
Set the value of the KshapePassive property. More... | |
const double & | get_Af () const |
Get the value of the Af property. More... | |
double & | upd_Af () |
Get a writable reference to the Af property. More... | |
void | set_Af (const double &value) |
Set the value of the Af property. More... | |
const double & | get_Flen () const |
Get the value of the Flen property. More... | |
double & | upd_Flen () |
Get a writable reference to the Flen property. More... | |
void | set_Flen (const double &value) |
Set the value of the Flen property. More... | |
const double & | get_fv_linear_extrap_threshold () const |
Get the value of the fv_linear_extrap_threshold property. More... | |
double & | upd_fv_linear_extrap_threshold () |
Get a writable reference to the fv_linear_extrap_threshold property. More... | |
void | set_fv_linear_extrap_threshold (const double &value) |
Set the value of the fv_linear_extrap_threshold property. More... | |
const double & | get_maximum_pennation_angle () const |
Get the value of the maximum_pennation_angle property. More... | |
double & | upd_maximum_pennation_angle () |
Get a writable reference to the maximum_pennation_angle property. More... | |
void | set_maximum_pennation_angle (const double &value) |
Set the value of the maximum_pennation_angle property. More... | |
const double & | get_activation_time_constant () const |
Get the value of the activation_time_constant property. More... | |
double & | upd_activation_time_constant () |
Get a writable reference to the activation_time_constant property. More... | |
void | set_activation_time_constant (const double &value) |
Set the value of the activation_time_constant property. More... | |
const double & | get_deactivation_time_constant () const |
Get the value of the deactivation_time_constant property. More... | |
double & | upd_deactivation_time_constant () |
Get a writable reference to the deactivation_time_constant property. More... | |
void | set_deactivation_time_constant (const double &value) |
Set the value of the deactivation_time_constant property. More... | |
const double & | get_minimum_activation () const |
Get the value of the minimum_activation property. More... | |
double & | upd_minimum_activation () |
Get a writable reference to the minimum_activation property. More... | |
void | set_minimum_activation (const double &value) |
Set the value of the minimum_activation property. More... | |
Convenience methods | |
These are convenience methods that get and set properties of the activation and pennation models. | |
double | getActivationTimeConstant () const |
void | setActivationTimeConstant (double actTimeConstant) |
double | getDeactivationTimeConstant () const |
void | setDeactivationTimeConstant (double deactTimeConstant) |
double | getMinimumActivation () const |
void | setMinimumActivation (double minimumActivation) |
double | getMaximumPennationAngle () const |
void | setMaximumPennationAngle (double maximumPennationAngle) |
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ActivationFiberLengthMuscle () | |
double | getDefaultActivation () const |
void | setDefaultActivation (double activation) |
double | getDefaultFiberLength () const |
void | setDefaultFiberLength (double length) |
void | setActivation (SimTK::State &s, double activation) const override |
DEPRECATED: only for backward compatibility. More... | |
void | setFiberLength (SimTK::State &s, double fiberLength) const |
double | getActivationRate (const SimTK::State &s) const |
void | extendPostScale (const SimTK::State &s, const ScaleSet &scaleSet) override |
Adjust the properties of the muscle after the model has been scaled. More... | |
const double & | get_default_activation () const |
Get the value of the default_activation property. More... | |
double & | upd_default_activation () |
Get a writable reference to the default_activation property. More... | |
void | set_default_activation (const double &value) |
Set the value of the default_activation property. More... | |
const double & | get_default_fiber_length () const |
Get the value of the default_fiber_length property. More... | |
double & | upd_default_fiber_length () |
Get a writable reference to the default_fiber_length property. More... | |
void | set_default_fiber_length (const double &value) |
Set the value of the default_fiber_length property. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
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const double & | get_max_isometric_force () const |
Get the value of the max_isometric_force property. More... | |
double & | upd_max_isometric_force () |
Get a writable reference to the max_isometric_force property. More... | |
void | set_max_isometric_force (const double &value) |
Set the value of the max_isometric_force property. More... | |
const double & | get_optimal_fiber_length () const |
Get the value of the optimal_fiber_length property. More... | |
double & | upd_optimal_fiber_length () |
Get a writable reference to the optimal_fiber_length property. More... | |
void | set_optimal_fiber_length (const double &value) |
Set the value of the optimal_fiber_length property. More... | |
const double & | get_tendon_slack_length () const |
Get the value of the tendon_slack_length property. More... | |
double & | upd_tendon_slack_length () |
Get a writable reference to the tendon_slack_length property. More... | |
void | set_tendon_slack_length (const double &value) |
Set the value of the tendon_slack_length property. More... | |
const double & | get_pennation_angle_at_optimal () const |
Get the value of the pennation_angle_at_optimal property. More... | |
double & | upd_pennation_angle_at_optimal () |
Get a writable reference to the pennation_angle_at_optimal property. More... | |
void | set_pennation_angle_at_optimal (const double &value) |
Set the value of the pennation_angle_at_optimal property. More... | |
const double & | get_max_contraction_velocity () const |
Get the value of the max_contraction_velocity property. More... | |
double & | upd_max_contraction_velocity () |
Get a writable reference to the max_contraction_velocity property. More... | |
void | set_max_contraction_velocity (const double &value) |
Set the value of the max_contraction_velocity property. More... | |
const bool & | get_ignore_tendon_compliance () const |
Get the value of the ignore_tendon_compliance property. More... | |
bool & | upd_ignore_tendon_compliance () |
Get a writable reference to the ignore_tendon_compliance property. More... | |
void | set_ignore_tendon_compliance (const bool &value) |
Set the value of the ignore_tendon_compliance property. More... | |
const bool & | get_ignore_activation_dynamics () const |
Get the value of the ignore_activation_dynamics property. More... | |
bool & | upd_ignore_activation_dynamics () |
Get a writable reference to the ignore_activation_dynamics property. More... | |
void | set_ignore_activation_dynamics (const bool &value) |
Set the value of the ignore_activation_dynamics property. More... | |
Muscle () | |
Default constructor. More... | |
double | getMaxIsometricForce () const |
get/set the maximum isometric force (in N) that the fibers can generate More... | |
void | setMaxIsometricForce (double maxIsometricForce) |
double | getOptimalFiberLength () const |
get/set the optimal length (in m) of the muscle fibers (lumped as a single fiber) More... | |
void | setOptimalFiberLength (double optimalFiberLength) |
double | getTendonSlackLength () const |
get/set the resting (slack) length (in m) of the tendon that is in series with the muscle fiber More... | |
void | setTendonSlackLength (double tendonSlackLength) |
double | getPennationAngleAtOptimalFiberLength () const |
get/set the angle (in radians) between fibers at their optimal fiber length and the tendon More... | |
void | setPennationAngleAtOptimalFiberLength (double pennationAngle) |
double | getMaxContractionVelocity () const |
get/set the maximum contraction velocity of the fibers, in optimal fiber-lengths per second More... | |
void | setMaxContractionVelocity (double maxContractionVelocity) |
bool | getIgnoreTendonCompliance (const SimTK::State &s) const |
Get/set Modeling (runtime) option to ignore tendon compliance when computing muscle dynamics. More... | |
void | setIgnoreTendonCompliance (SimTK::State &s, bool ignore) const |
bool | getIgnoreActivationDynamics (const SimTK::State &s) const |
Get/set Modeling (runtime) option to ignore activation dynamics when computing muscle dynamics. More... | |
void | setIgnoreActivationDynamics (SimTK::State &s, bool ignore) const |
virtual double | getActivation (const SimTK::State &s) const |
get the activation level of the muscle, which modulates the active force of the muscle and has a normalized (0 to 1) value Note: method remains virtual to permit override by deprecated muscles. More... | |
double | getFiberLength (const SimTK::State &s) const |
get the current working fiber length (m) for the muscle More... | |
double | getPennationAngle (const SimTK::State &s) const |
get the current pennation angle (radians) between the fiber and tendon at the current fiber length More... | |
double | getCosPennationAngle (const SimTK::State &s) const |
get the cosine of the current pennation angle (radians) between the fiber and tendon at the current fiber length More... | |
double | getTendonLength (const SimTK::State &s) const |
get the current tendon length (m) given the current joint angles and fiber length More... | |
double | getNormalizedFiberLength (const SimTK::State &s) const |
get the current normalized fiber length (fiber_length/optimal_fiber_length) More... | |
double | getFiberLengthAlongTendon (const SimTK::State &s) const |
get the current fiber length (m) projected (*cos(pennationAngle)) onto the tendon direction More... | |
double | getTendonStrain (const SimTK::State &s) const |
get the current tendon strain (delta_l/tendon_slack_length is dimensionless) More... | |
double | getFiberPotentialEnergy (const SimTK::State &s) const |
the potential energy (J) stored in the fiber due to its parallel elastic element More... | |
double | getTendonPotentialEnergy (const SimTK::State &s) const |
the potential energy (J) stored in the tendon More... | |
double | getMusclePotentialEnergy (const SimTK::State &s) const |
the total potential energy (J) stored in the muscle More... | |
double | getPassiveForceMultiplier (const SimTK::State &s) const |
get the passive fiber (parallel elastic element) force multiplier More... | |
double | getActiveForceLengthMultiplier (const SimTK::State &s) const |
get the active fiber (contractile element) force multiplier due to current fiber length More... | |
double | getFiberVelocity (const SimTK::State &s) const |
get current fiber velocity (m/s) positive is lengthening More... | |
double | getNormalizedFiberVelocity (const SimTK::State &s) const |
get normalized fiber velocity. More... | |
double | getFiberVelocityAlongTendon (const SimTK::State &s) const |
get the current fiber velocity (m/s) projected onto the tendon direction More... | |
double | getPennationAngularVelocity (const SimTK::State &s) const |
get pennation angular velocity (radians/s) More... | |
double | getTendonVelocity (const SimTK::State &s) const |
get the tendon velocity (m/s) positive is lengthening More... | |
double | getForceVelocityMultiplier (const SimTK::State &s) const |
get the dimensionless multiplier resulting from the fiber's force-velocity curve More... | |
double | getFiberForce (const SimTK::State &s) const |
get the current fiber force (N) applied to the tendon More... | |
double | getFiberForceAlongTendon (const SimTK::State &s) const |
get the force of the fiber (N/m) along the direction of the tendon More... | |
double | getActiveFiberForce (const SimTK::State &s) const |
get the current active fiber force (N) due to activation*force_length*force_velocity relationships More... | |
double | getPassiveFiberForce (const SimTK::State &s) const |
get the total force applied by all passive elements in the fiber (N) More... | |
double | getActiveFiberForceAlongTendon (const SimTK::State &s) const |
get the current active fiber force (N) projected onto the tendon direction More... | |
double | getPassiveFiberForceAlongTendon (const SimTK::State &s) const |
get the total force applied by all passive elements in the fiber (N) projected onto the tendon direction More... | |
double | getTendonForce (const SimTK::State &s) const |
get the current tendon force (N) applied to bones More... | |
double | getFiberStiffness (const SimTK::State &s) const |
get the current fiber stiffness (N/m) defined as the partial derivative of fiber force with respect to fiber length More... | |
double | getFiberStiffnessAlongTendon (const SimTK::State &s) const |
get the stiffness of the fiber (N/m) along the direction of the tendon, that is the partial derivative of the fiber force along the tendon with respect to small changes in fiber length along the tendon More... | |
double | getTendonStiffness (const SimTK::State &s) const |
get the current tendon stiffness (N/m) defined as the partial derivative of tendon force with respect to tendon length More... | |
double | getMuscleStiffness (const SimTK::State &s) const |
get the current muscle stiffness (N/m) defined as the partial derivative of muscle force with respect to muscle length More... | |
double | getFiberActivePower (const SimTK::State &s) const |
get the current active fiber power (W) More... | |
double | getFiberPassivePower (const SimTK::State &s) const |
get the current passive fiber power (W) More... | |
double | getTendonPower (const SimTK::State &s) const |
get the current tendon power (W) More... | |
double | getMusclePower (const SimTK::State &s) const |
get the current muscle power (W) More... | |
double | getStress (const SimTK::State &s) const override |
get the stress in the muscle (part of the Actuator interface as well) More... | |
void | setExcitation (SimTK::State &s, double excitation) const |
set the excitation (control) for this muscle. More... | |
double | getExcitation (const SimTK::State &s) const |
void | computeEquilibrium (SimTK::State &s) const override final |
Find and set the equilibrium state of the muscle (if any) More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
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PathActuator () | |
AbstractGeometryPath & | updPath () |
const AbstractGeometryPath & | getPath () const |
template<typename PathType > | |
PathType & | updPath () |
template<typename PathType > | |
const PathType & | getPath () const |
template<typename PathType > | |
PathType * | tryUpdPath () |
template<typename PathType > | |
const PathType * | tryGetPath () const |
GeometryPath & | updGeometryPath () |
const GeometryPath & | getGeometryPath () const |
bool | hasVisualPath () const override |
Return a flag indicating whether the Force is applied along a path that can be visualized. More... | |
void | setOptimalForce (double aOptimalForce) |
double | getOptimalForce () const override |
virtual double | getLength (const SimTK::State &s) const |
virtual double | getLengtheningSpeed (const SimTK::State &s) const |
double | getSpeed (const SimTK::State &s) const final |
double | getPower (const SimTK::State &s) const override |
double | getStress (const SimTK::State &s) const override |
void | addNewPathPoint (const std::string &proposedName, const PhysicalFrame &aBody, const SimTK::Vec3 &aPositionOnBody) |
double | computeActuation (const SimTK::State &s) const override |
virtual double | computeMomentArm (const SimTK::State &s, Coordinate &aCoord) const |
const AbstractGeometryPath & | get_path () const |
Get the value of the path property. More... | |
AbstractGeometryPath & | upd_path () |
Get a writable reference to the path property. More... | |
void | set_path (const AbstractGeometryPath &value) |
Set the value of the path property. More... | |
const double & | get_optimal_force () const |
Get the value of the optimal_force property. More... | |
double & | upd_optimal_force () |
Get a writable reference to the optimal_force property. More... | |
void | set_optimal_force (const double &value) |
Set the value of the optimal_force property. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
PathActuator * | clone () const override |
Create a new heap-allocated copy of the concrete object to which this Object refers. More... | |
const std::string & | getConcreteClassName () const override |
Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More... | |
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ScalarActuator () | |
virtual double | getControl (const SimTK::State &s) const |
Convenience method to get control given scalar (double) valued control. More... | |
int | numControls () const override |
virtual void | setActuation (const SimTK::State &s, double aActuation) const |
virtual double | getActuation (const SimTK::State &s) const |
void | setMinControl (const double &aMinControl) |
Methods to manage the bounds on ScalarActuator's control. More... | |
double | getMinControl () const |
void | setMaxControl (const double &aMaxControl) |
double | getMaxControl () const |
void | overrideActuation (SimTK::State &s, bool flag) const |
Enable/disable a ScalarActuator's override actuation. More... | |
bool | isActuationOverridden (const SimTK::State &s) const |
return ScalarActuator's override status More... | |
void | setOverrideActuation (SimTK::State &s, double value) const |
set the actuation value used when the override is true More... | |
double | getOverrideActuation (const SimTK::State &s) const |
return override actuation More... | |
const double & | get_min_control () const |
Get the value of the min_control property. More... | |
double & | upd_min_control () |
Get a writable reference to the min_control property. More... | |
void | set_min_control (const double &value) |
Set the value of the min_control property. More... | |
const double & | get_max_control () const |
Get the value of the max_control property. More... | |
double & | upd_max_control () |
Get a writable reference to the max_control property. More... | |
void | set_max_control (const double &value) |
Set the value of the max_control property. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
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Actuator () | |
virtual const SimTK::Vector | getDefaultControls () |
Actuator default controls are zero. More... | |
virtual const SimTK::VectorView_< double > | getControls (const SimTK::State &s) const |
virtual void | getControls (const SimTK::Vector &modelControls, SimTK::Vector &actuatorControls) const |
Convenience methods for getting, setting and adding to actuator controls from/into the model controls. More... | |
virtual void | setControls (const SimTK::Vector &actuatorControls, SimTK::Vector &modelControls) const |
set actuator controls subvector into the right slot in the system-wide model controls More... | |
virtual void | addInControls (const SimTK::Vector &actuatorControls, SimTK::Vector &modelControls) const |
add actuator controls to the values already occupying the slot in the system-wide model controls More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
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virtual bool | shouldBeParallelized () const |
Tell Simbody to parallelize this force. More... | |
bool | appliesForce (const SimTK::State &s) const |
Return if the Force is applied (or enabled) or not. More... | |
void | setAppliesForce (SimTK::State &s, bool applyForce) const |
Set whether or not the Force is applied. More... | |
SimTK::ForceIndex | getForceIndex () const |
Return the index to the SimTK::Force in the underlying system. More... | |
const bool & | get_appliesForce () const |
Get the value of the appliesForce property. More... | |
bool & | upd_appliesForce () |
Get a writable reference to the appliesForce property. More... | |
void | set_appliesForce (const bool &value) |
Set the value of the appliesForce property. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
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ModelComponent () | |
Default constructor. More... | |
ModelComponent (const std::string &aFileName, bool aUpdateFromXMLNode=true) | |
Construct ModelComponent from an XML file. More... | |
ModelComponent (SimTK::Xml::Element &aNode) | |
Construct ModelComponent from a specific node in an XML document. More... | |
virtual | ~ModelComponent () |
Destructor is virtual to allow concrete model component cleanup. More... | |
void | connectToModel (Model &model) |
Connect this ModelComponent to its aggregate- a Model. More... | |
const Model & | getModel () const |
Get a const reference to the Model this component is part of. More... | |
Model & | updModel () |
Get a modifiable reference to the Model this component is part of. More... | |
bool | hasModel () const |
Does this ModelComponent have a Model associated with it? More... | |
void | preScale (const SimTK::State &s, const ScaleSet &scaleSet) |
Perform any computations that must occur before ModelComponent::scale() is invoked on all ModelComponents in the Model. More... | |
void | scale (const SimTK::State &s, const ScaleSet &scaleSet) |
Scale the ModelComponent. More... | |
void | postScale (const SimTK::State &s, const ScaleSet &scaleSet) |
Perform any computations that must occur after ModelComponent::scale() has been invoked on all ModelComponents in the Model. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
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Component () | |
Default constructor. More... | |
Component (const std::string &aFileName, bool aUpdateFromXMLNode=true) | |
Construct Component from an XML file. More... | |
Component (SimTK::Xml::Element &aNode) | |
Construct Component from a specific node in an XML document. More... | |
Component (const Component &)=default | |
Use default copy constructor and assignment operator. More... | |
Component & | operator= (const Component &)=default |
virtual | ~Component ()=default |
Destructor is virtual to allow concrete Component to cleanup. More... | |
virtual void | generateDecorations (bool fixed, const ModelDisplayHints &hints, const SimTK::State &state, SimTK::Array_< SimTK::DecorativeGeometry > &appendToThis) const |
Optional method for generating arbitrary display geometry that reflects this Component at the specified state. More... | |
const SimTK::MultibodySystem & | getSystem () const |
Get the underlying MultibodySystem that this component is connected to. More... | |
bool | hasSystem () const |
Check if this component has an underlying MultibodySystem. More... | |
bool | isComponentInOwnershipTree (const Component *component) const |
Does the provided component already exist anywhere in the ownership tree (not just subcomponents of this component)? More... | |
void | addComponent (Component *subcomponent) |
Add a Component (as a subcomponent) of this component. More... | |
template<typename T = Component> | |
ComponentList< const T > | getComponentList () const |
Get an iterator through the underlying subcomponents that this component is composed of. More... | |
template<typename T = Component> | |
ComponentList< T > | updComponentList () |
Similar to getComponentList(), except the resulting list allows one to modify the components. More... | |
template<typename T = Component> | |
unsigned | countNumComponents () const |
Uses getComponentList<T>() to count the number of underlying subcomponents of the specified type. More... | |
std::string | getAbsolutePathString () const |
Get the complete (absolute) pathname for this Component to its ancestral Component, which is the root of the tree to which this Component belongs. More... | |
ComponentPath | getAbsolutePath () const |
Return a ComponentPath of the absolute path of this Component. More... | |
std::string | getRelativePathString (const Component &wrt) const |
Get the relative path of this Component with respect to another Component, as a string. More... | |
ComponentPath | getRelativePath (const Component &wrt) const |
Get the relative path of this Component with respect to another Component. More... | |
bool | hasComponent (const std::string &pathname) const |
Query if there is a component (of any type) at the specified path name. More... | |
template<class C = Component> | |
bool | hasComponent (const std::string &pathname) const |
Query if there is a component of a given type at the specified path name. More... | |
template<class C = Component> | |
const C & | getComponent (const std::string &pathname) const |
Get a unique subcomponent of this Component by its path name and type 'C'. More... | |
template<class C = Component> | |
const C & | getComponent (const ComponentPath &pathname) const |
const Component & | getComponent (const std::string &pathname) const |
Similar to the templatized getComponent(), except this returns the component as the generic Component type. More... | |
template<class C = Component> | |
C & | updComponent (const std::string &name) |
Get a writable reference to a subcomponent. More... | |
template<class C = Component> | |
C & | updComponent (const ComponentPath &name) |
Component & | updComponent (const std::string &pathname) |
Similar to the templatized updComponent(), except this returns the component as the generic Component type. More... | |
unsigned | printComponentsMatching (const std::string &substring) const |
Print a list to the console of all components whose absolute path name contains the given string. More... | |
int | getNumStateVariables () const |
Get the number of "continuous" state variables maintained by the Component and its subcomponents. More... | |
Array< std::string > | getStateVariableNames () const |
Get the names of continuous state variables maintained by the Component and its subcomponents. More... | |
Array< std::string > | getDiscreteVariableNames () const |
Get the names of discrete state variables maintained by the Component and its subcomponents. More... | |
Array< std::string > | getModelingOptionNames () const |
Get the names of the modeling options maintained by the Component and its subcomponents. More... | |
void | finalizeFromProperties () |
Define a Component's internal data members and structure according to its properties. More... | |
void | finalizeConnections (Component &root) |
Satisfy the Component's connections specified by its Sockets and Inputs. More... | |
void | clearConnections () |
Disconnect/clear this Component from its aggregate component. More... | |
void | addToSystem (SimTK::MultibodySystem &system) const |
Have the Component add itself to the underlying computational System. More... | |
void | initStateFromProperties (SimTK::State &state) const |
Initialize Component's state variable values from its properties. More... | |
void | setPropertiesFromState (const SimTK::State &state) |
Set Component's properties given a state. More... | |
int | getNumSockets () const |
Get the number of Sockets in this Component. More... | |
std::vector< std::string > | getSocketNames () const |
Collect and return the names of the sockets in this component. More... | |
template<typename T > | |
const T & | getConnectee (const std::string &name) const |
Get the "connectee" object that the Component's Socket is bound to. More... | |
template<typename T > | |
const T & | getConnectee (const std::string &name, int index) const |
Get the "connectee" object at the provided index that the Component's Socket is bound to. More... | |
const Object & | getConnectee (const std::string &name) const |
Get the connectee as an Object. More... | |
const Object & | getConnectee (const std::string &name, int index) const |
Get the connectee at the provided index as an Object. More... | |
const AbstractSocket * | tryGetSocket (const std::string &name) const |
Returns a pointer to the AbstractSocket with a given socket name, or nullptr if the socket with the given name does not exist on the component. More... | |
const AbstractSocket & | getSocket (const std::string &name) const |
Get an AbstractSocket for the given socket name. More... | |
const AbstractSocket * | tryUpdSocket (const std::string &name) |
Returns a writable pointer to the AbstractSocket with a given socket name, or nullptr if the socket with the given name does not exist on the component. More... | |
AbstractSocket & | updSocket (const std::string &name) |
Get a writable reference to the AbstractSocket for the given socket name. More... | |
template<typename T > | |
const Socket< T > & | getSocket (const std::string &name) const |
Get a const reference to the concrete Socket provided by this Component by name. More... | |
template<typename T > | |
Socket< T > & | updSocket (const std::string &name) |
Get a writable reference to the concrete Socket provided by this Component by name. More... | |
int | getModelingOption (const SimTK::State &state, const std::string &path) const |
Based on a specified path, get the value of a modeling option. More... | |
int | getModelingOption (const SimTK::State &state, const ComponentPath &path) const |
void | setModelingOption (SimTK::State &state, const std::string &path, int flag) const |
Based on a specified path, set the value of a modeling option. More... | |
void | setModelingOption (SimTK::State &state, const ComponentPath &path, int flag) const |
template<typename T > | |
const T & | getInputValue (const SimTK::State &state, const std::string &name) const |
Get the Input value that this component is dependent on. More... | |
template<typename T > | |
const T & | getOutputValue (const SimTK::State &state, const std::string &name) const |
Get the Output value provided by this Component by name. More... | |
double | getStateVariableValue (const SimTK::State &state, const std::string &name) const |
Get the value of a state variable allocated by this Component. More... | |
double | getStateVariableValue (const SimTK::State &state, const ComponentPath &path) const |
Get the value of a state variable allocated by this Component. More... | |
void | setStateVariableValue (SimTK::State &state, const std::string &name, double value) const |
Set the value of a state variable allocated by this Component by name. More... | |
SimTK::Vector | getStateVariableValues (const SimTK::State &state) const |
Get all values of the state variables allocated by this Component. More... | |
void | setStateVariableValues (SimTK::State &state, const SimTK::Vector &values) const |
Set all values of the state variables allocated by this Component. More... | |
double | getStateVariableDerivativeValue (const SimTK::State &state, const std::string &name) const |
Get the value of a state variable derivative computed by this Component. More... | |
double | getStateVariableDerivativeValue (const SimTK::State &state, const ComponentPath &path) const |
Get the value of a state variable derivative computed by this Component. More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
int | getNumInputs () const |
Access the number of Inputs that this component has. More... | |
int | getNumOutputs () const |
Access the number of Outputs that this component has. More... | |
std::vector< std::string > | getInputNames () const |
Collect and return the names of Inputs in this component as an std::vector. More... | |
std::vector< std::string > | getOutputNames () const |
Collect and return the names of Outputs in this component as an std::vector. More... | |
const AbstractInput & | getInput (const std::string &name) const |
Get an Input provided by this Component by name. More... | |
AbstractInput & | updInput (const std::string &name) |
Get a writable reference to an Input provided by this Component by name. More... | |
template<typename T > | |
const Input< T > & | getInput (const std::string &name) const |
Get a concrete Input that you can directly ask for its values. More... | |
const AbstractOutput * | tryGetOutput (const std::string &name) const |
If it exists on the component, returns a pointer to the named Output ; otherwise, returns a nullptr . More... | |
const AbstractOutput & | getOutput (const std::string &name) const |
Get the Output provided by this Component by name. More... | |
AbstractOutput * | tryUpdOutput (const std::string &name) |
If it exists on the component returns a writable pointer to the named Output ; otherwise, returns a nullptr More... | |
AbstractOutput & | updOutput (const std::string &name) |
Get a writable reference to an Output provided by this Component by name. More... | |
SimTK::IteratorRange< OutputConstIterator > | getOutputs () const |
Iterate through all Outputs of this component. More... | |
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virtual | ~Object () |
Virtual destructor for cleanup. More... | |
bool | isEqualTo (const Object &aObject) const |
Equality operator wrapper for use from languages not supporting operator overloading. More... | |
Object & | operator= (const Object &aObject) |
Copy assignment copies he base class fields, including the properties. More... | |
virtual bool | operator== (const Object &aObject) const |
Determine if two objects are equal. More... | |
virtual bool | operator< (const Object &aObject) const |
Provide an ordering for objects so they can be put in sorted containers. More... | |
void | setName (const std::string &name) |
Set the name of the Object. More... | |
const std::string & | getName () const |
Get the name of this Object. More... | |
void | setDescription (const std::string &description) |
Set description, a one-liner summary. More... | |
const std::string & | getDescription () const |
Get description, a one-liner summary. More... | |
const std::string & | getAuthors () const |
Get Authors of this Object. More... | |
void | setAuthors (const std::string &authors) |
Set Authors of this object. More... | |
const std::string & | getReferences () const |
Get references or publications to cite if using this object. More... | |
void | setReferences (const std::string &references) |
Set references or publications to cite if using this object. More... | |
int | getNumProperties () const |
Determine how many properties are stored with this Object. More... | |
const AbstractProperty & | getPropertyByIndex (int propertyIndex) const |
Get a const reference to a property by its index number, returned as an AbstractProperty. More... | |
AbstractProperty & | updPropertyByIndex (int propertyIndex) |
Get a writable reference to a property by its index number, returned as an AbstractProperty. More... | |
bool | hasProperty (const std::string &name) const |
Return true if this Object has a property of any type with the given name, which must not be empty. More... | |
const AbstractProperty & | getPropertyByName (const std::string &name) const |
Get a const reference to a property by its name, returned as an AbstractProperty. More... | |
AbstractProperty & | updPropertyByName (const std::string &name) |
Get a writable reference to a property by its name, returned as an AbstractProperty. More... | |
template<class T > | |
bool | hasProperty () const |
Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. More... | |
template<class T > | |
const Property< T > & | getProperty (const PropertyIndex &index) const |
Get property of known type Property<T> as a const reference; the property must be present and have the right type. More... | |
template<class T > | |
const Property< T > & | getPropertyByName (const std::string &name) const |
Get property of known type Property<T> as a const reference; the property must be present and have the right type. More... | |
template<class T > | |
Property< T > & | updProperty (const PropertyIndex &index) |
Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More... | |
template<class T > | |
Property< T > & | updPropertyByName (const std::string &name) |
Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More... | |
bool | isObjectUpToDateWithProperties () const |
Returns true if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. More... | |
void | readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber) |
We're given an XML element from which we are to populate this Object. More... | |
void | updateXMLNode (SimTK::Xml::Element &parent, const AbstractProperty *prop=nullptr) const |
Serialize this object into the XML node that represents it. More... | |
bool | getInlined () const |
Inlined means an in-memory Object that is not associated with an XMLDocument. More... | |
void | setInlined (bool aInlined, const std::string &aFileName="") |
Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. More... | |
std::string | getDocumentFileName () const |
If there is a document associated with this object then return the file name maintained by the document. More... | |
int | getDocumentFileVersion () const |
If there is a document associated with this object then return its version number. More... | |
void | setAllPropertiesUseDefault (bool aUseDefault) |
bool | print (const std::string &fileName) const |
Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". More... | |
std::string | dump () const |
dump the XML representation of this Object into an std::string and return it. More... | |
virtual bool | isA (const char *type) const |
The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. More... | |
const std::string & | toString () const |
Wrapper to be used on Java side to display objects in tree; this returns just the object's name. More... | |
PropertySet & | getPropertySet () |
OBSOLETE: Get a reference to the PropertySet maintained by the Object. More... | |
const PropertySet & | getPropertySet () const |
Public Types | |
enum | CurveType { FiberActiveForceLength, FiberPassiveForceLength, FiberForceVelocity, TendonForceLength } |
typedef Thelen2003Muscle | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef ActivationFiberLengthMuscle | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef ActivationFiberLengthMuscle | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Muscle | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef Muscle | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef PathActuator | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef PathActuator | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef ScalarActuator | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef ScalarActuator | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Actuator | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef Actuator | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Force | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef Force | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef ModelComponent | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef ModelComponent | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Component | Super |
Use this typedef to refer to the superclass of this class. More... | |
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typedef Component | Self |
This typedef might be useful within the member functions of this class. More... | |
typedef Object | Super |
Use this typedef to refer to the superclass of this class. More... | |
typedef std::map< std::string, SimTK::ClonePtr< AbstractOutput > >::const_iterator | OutputConstIterator |
Define OutputConstIterator for convenience. More... | |
Protected Member Functions | |
void | calcMuscleLengthInfo (const SimTK::State &s, MuscleLengthInfo &mli) const override |
calculate muscle's position related values such fiber and tendon lengths, normalized lengths, pennation angle, etc... More... | |
void | calcFiberVelocityInfo (const SimTK::State &s, FiberVelocityInfo &fvi) const override |
calculate muscle's velocity related values such fiber and tendon velocities,normalized velocities, pennation angular velocity, etc... More... | |
void | calcMuscleDynamicsInfo (const SimTK::State &s, MuscleDynamicsInfo &mdi) const override |
calculate muscle's active and passive force-length, force-velocity, tendon force, relationships and their related values More... | |
void | calcMusclePotentialEnergyInfo (const SimTK::State &s, MusclePotentialEnergyInfo &mpei) const override |
calculate muscle's fiber and tendon potential energy More... | |
double | calcActivationRate (const SimTK::State &s) const override |
Calculate activation rate. More... | |
void | extendFinalizeFromProperties () override |
Component interface. More... | |
void | extendConnectToModel (Model &aModel) override |
Implement the ModelComponent interface. More... | |
void | extendInitStateFromProperties (SimTK::State &s) const override |
void | extendSetPropertiesFromState (const SimTK::State &state) override |
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virtual void | computeForce (const SimTK::State &state, SimTK::Vector_< SimTK::SpatialVec > &bodyForces, SimTK::Vector &generalizedForce) const override |
Subclasses must implement this method to compute the forces that should be applied to bodies and generalized speeds. More... | |
void | extendConnectToModel (Model &aModel) override |
Model Component Interface. More... | |
void | extendAddToSystem (SimTK::MultibodySystem &system) const override |
void | extendInitStateFromProperties (SimTK::State &s) const override |
void | extendSetPropertiesFromState (const SimTK::State &state) override |
void | computeStateVariableDerivatives (const SimTK::State &s) const override |
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const MuscleLengthInfo & | getMuscleLengthInfo (const SimTK::State &s) const |
Developer Access to intermediate values calculate by the muscle model. More... | |
MuscleLengthInfo & | updMuscleLengthInfo (const SimTK::State &s) const |
const FiberVelocityInfo & | getFiberVelocityInfo (const SimTK::State &s) const |
FiberVelocityInfo & | updFiberVelocityInfo (const SimTK::State &s) const |
const MuscleDynamicsInfo & | getMuscleDynamicsInfo (const SimTK::State &s) const |
MuscleDynamicsInfo & | updMuscleDynamicsInfo (const SimTK::State &s) const |
const MusclePotentialEnergyInfo & | getMusclePotentialEnergyInfo (const SimTK::State &s) const |
MusclePotentialEnergyInfo & | updMusclePotentialEnergyInfo (const SimTK::State &s) const |
virtual double | calcMuscleStiffness (const SimTK::State &s) const |
Calculate muscle's stiffness. More... | |
void | computeForce (const SimTK::State &state, SimTK::Vector_< SimTK::SpatialVec > &bodyForces, SimTK::Vector &generalizedForce) const override |
Force interface applies tension to bodies, and Muscle also checks that applied muscle tension is not negative. More... | |
double | computePotentialEnergy (const SimTK::State &state) const override |
Potential energy stored by the muscle. More... | |
SimTK::Vec3 | computePathColor (const SimTK::State &state) const override |
Override PathActuator virtual to calculate a preferred color for the muscle path based on activation. More... | |
void | extendConnectToModel (Model &aModel) override |
Model Component creation interface. More... | |
void | extendAddToSystem (SimTK::MultibodySystem &system) const override |
void | extendSetPropertiesFromState (const SimTK::State &s) override |
void | extendInitStateFromProperties (SimTK::State &state) const override |
virtual void | updateGeometry (const SimTK::State &s) |
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void | extendRealizeDynamics (const SimTK::State &state) const override |
Extension of parent class method; derived classes may extend further. More... | |
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void | extendAddToSystem (SimTK::MultibodySystem &system) const override |
double | computeOverrideActuation (const SimTK::State &s) const |
OpenSim::Array< std::string > | getRecordLabels () const override |
Methods to query a actuation for the value actually applied during simulation. More... | |
OpenSim::Array< double > | getRecordValues (const SimTK::State &state) const override |
Given SimTK::State object extract all the values necessary to report actuation, application location frame, etc. More... | |
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void | extendAddToSystem (SimTK::MultibodySystem &system) const override |
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Force () | |
Default constructor sets up Force-level properties; can only be called from a derived class constructor. More... | |
Force (SimTK::Xml::Element &node) | |
Deserialization from XML, necessary so that derived classes can (de)serialize. More... | |
void | extendInitStateFromProperties (SimTK::State &state) const override |
Subclass should override; be sure to invoke Super::extendInitStateFromProperties() at the beginning of the overriding method. More... | |
void | extendAddToSystem (SimTK::MultibodySystem &system) const override |
Default is to create a ForceAdapter which is a SimTK::Force::Custom as the underlying computational component. More... | |
void | extendSetPropertiesFromState (const SimTK::State &state) override |
Subclass should override; be sure to invoke Force::extendSetPropertiesFromState() at the beginning of the overriding method. More... | |
void | applyForceToPoint (const SimTK::State &state, const PhysicalFrame &body, const SimTK::Vec3 &point, const SimTK::Vec3 &force, SimTK::Vector_< SimTK::SpatialVec > &bodyForces) const |
Apply a force at a particular point (a "station") on a given body. More... | |
void | applyTorque (const SimTK::State &state, const PhysicalFrame &body, const SimTK::Vec3 &torque, SimTK::Vector_< SimTK::SpatialVec > &bodyForces) const |
Apply a torque to a particular body. More... | |
void | applyGeneralizedForce (const SimTK::State &state, const Coordinate &coord, double force, SimTK::Vector &generalizedForces) const |
Apply a generalized force. More... | |
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const SimTK::Vec3 & | getScaleFactors (const ScaleSet &scaleSet, const Frame &frame) const |
Get the scale factors corresponding to the base OpenSim::Body of the specified Frame. More... | |
virtual void | extendPreScale (const SimTK::State &s, const ScaleSet &scaleSet) |
Perform any computations that must occur before ModelComponent::scale() is invoked on all ModelComponents in the Model. More... | |
virtual void | extendScale (const SimTK::State &s, const ScaleSet &scaleSet) |
Scale the ModelComponent. More... | |
void | extendFinalizeFromProperties () override |
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const Component & | get_components (int i) const |
Get the value of the i-th element of the components property. More... | |
Component & | upd_components (int i) |
Get a writable reference to the i-th element of the components property. More... | |
void | set_components (int i, const Component &value) |
Set the value of the i-th element of components property. More... | |
int | append_components (const Component &value) |
Append an element to the components property. More... | |
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Object () | |
The default constructor is only for use by constructors of derived types. More... | |
Object (const std::string &fileName, bool aUpdateFromXMLNode=true) | |
Constructor from a file, to be called from other constructors that take a file as input. More... | |
Object (const Object &source) | |
Copy constructor is invoked automatically by derived classes with default copy constructors; otherwise it must be invoked explicitly. More... | |
Object (SimTK::Xml::Element &aElement) | |
Construct the base class portion of an Object from a given Xml element that describes this Object. More... | |
template<class T > | |
PropertyIndex | addProperty (const std::string &name, const std::string &comment, const T &value) |
Define a new single-value property of known type T, with the given name, associated comment, and initial value. More... | |
template<class T > | |
PropertyIndex | addOptionalProperty (const std::string &name, const std::string &comment) |
Add an optional property, meaning it can contain either no value or a single value. More... | |
template<class T > | |
PropertyIndex | addOptionalProperty (const std::string &name, const std::string &comment, const T &value) |
Add an optional property, meaning it can contain either no value or a single value. More... | |
template<class T > | |
PropertyIndex | addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize) |
Define a new list-valued property of known type T, with the given name, associated comment, minimum (==0) and maximum (>0) allowable list lengths, and a zero-length initial value. More... | |
template<class T , template< class > class Container> | |
PropertyIndex | addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize, const Container< T > &valueList) |
Define a new list-valued property as above, but assigning an initial value via some templatized container class that supports size() and indexing. More... | |
PropertyIndex | getPropertyIndex (const std::string &name) const |
Look up a property by name and return its PropertyIndex if it is found. More... | |
template<class T > | |
PropertyIndex | getPropertyIndex () const |
Look up an unnamed property by the type of object it contains, and return its PropertyIndex if it is found. More... | |
template<class T > | |
void | checkPropertyValueIsPositive (const Property< T > &p) const |
Throw an exception if any of the property's values are not positive. More... | |
template<class T > | |
void | checkPropertyValueIsInSet (const Property< T > &p, const std::set< T > &set) const |
Throw an exception if any of the property's values are not in the provided set. More... | |
template<class T > | |
void | checkPropertyValueIsInRangeOrSet (const Property< T > &p, const T &lower, const T &upper, const std::set< T > &set) const |
Throw an exception if any of the property's values are neither in the provided range nor in the provided set. More... | |
void | setObjectIsUpToDateWithProperties () |
When an object is initialized using the current values of its properties, it can set a flag indicating that it is up to date. More... | |
void | clearObjectIsUpToDateWithProperties () |
For testing or debugging purposes, manually clear the "object is up to
date with respect to properties" flag. More... | |
void | makeObjectNamesConsistentWithProperties () |
Make sure the name of an object is consistent with its property type. More... | |
void | updateFromXMLDocument () |
Use this method only if you're deserializing from a file and the object is at the top level; that is, primarily in constructors that take a file name as input. More... | |
void | setDocument (XMLDocument *) |
Unconditionally set the XMLDocument associated with this object. More... | |
const XMLDocument * | getDocument () const |
Get a const pointer to the document (if any) associated with this object. More... | |
XMLDocument * | updDocument () |
Get a writable pointer to the document (if any) associated with this object. More... | |
Auto-generated functions | |
static Thelen2003Muscle * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "Thelen2003Muscle". More... | |
void | assign (Object &aObject) override |
This allows copy assignment in the Java GUI. More... | |
Thelen2003Muscle * | clone () const override |
Create a new heap-allocated copy of the concrete object to which this Object refers. More... | |
const std::string & | getConcreteClassName () const override |
Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More... | |
Additional Inherited Members | |
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static ActivationFiberLengthMuscle * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "ActivationFiberLengthMuscle". More... | |
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static Muscle * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "Muscle". More... | |
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static PathActuator * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "PathActuator". More... | |
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static ScalarActuator * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "ScalarActuator". More... | |
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static Actuator * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "Actuator". More... | |
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static Force * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "Force". More... | |
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static ModelComponent * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "ModelComponent". More... | |
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static Component * | safeDownCast (OpenSim::Object *obj) |
For use in MATLAB and Python to access the concrete class. More... | |
static const std::string & | getClassName () |
This returns "Component". More... | |
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static void | registerType (const Object &defaultObject) |
Register an instance of a class; if the class is already registered it will be replaced. More... | |
static void | renameType (const std::string &oldTypeName, const std::string &newTypeName) |
Support versioning by associating the current Object type with an old name. More... | |
static const Object * | getDefaultInstanceOfType (const std::string &concreteClassName) |
Return a pointer to the default instance of the registered (concrete) Object whose class name is given, or NULL if the type is not registered. More... | |
template<class T > | |
static bool | isObjectTypeDerivedFrom (const std::string &concreteClassName) |
Return true if the given concrete object type represents a subclass of the template object type T, and thus could be referenced with a T*. More... | |
static Object * | newInstanceOfType (const std::string &concreteClassName) |
Create a new instance of the concrete Object type whose class name is given as concreteClassName. More... | |
static void | getRegisteredTypenames (Array< std::string > &typeNames) |
Retrieve all the typenames registered so far. More... | |
template<class T > | |
static void | getRegisteredObjectsOfGivenType (ArrayPtrs< T > &rArray) |
Return an array of pointers to the default instances of all registered (concrete) Object types that derive from a given Object-derived type that does not have to be concrete. More... | |
static bool | PrintPropertyInfo (std::ostream &os, const std::string &classNameDotPropertyName, bool printFlagInfo=true) |
Dump formatted property information to a given output stream, useful for creating a "help" facility for registered objects. More... | |
static bool | PrintPropertyInfo (std::ostream &os, const std::string &className, const std::string &propertyName, bool printFlagInfo=true) |
Same as the other signature but the class name and property name are provided as two separate strings. More... | |
static Object * | makeObjectFromFile (const std::string &fileName) |
Create an OpenSim object whose type is based on the tag at the root node of the XML file passed in. More... | |
static const std::string & | getClassName () |
Return the name of this class as a string; i.e., "Object". More... | |
static void | setSerializeAllDefaults (bool shouldSerializeDefaults) |
Static function to control whether all registered objects and their properties are written to the defaults section of output files rather than only those values for which the default was explicitly overwritten when read in from an input file or set programmatically. More... | |
static bool | getSerializeAllDefaults () |
Report the value of the "serialize all defaults" flag. More... | |
static bool | isKindOf (const char *type) |
Returns true if the passed-in string is "Object"; each Object-derived class defines a method of this name for its own class name. More... | |
static void | setDebugLevel (int newLevel) |
Set the amount of logging output. More... | |
static int | getDebugLevel () |
Get the current setting of debug level. More... | |
static Object * | SafeCopy (const Object *aObject) |
Use the clone() method to duplicate the given object unless the pointer is null in which case null is returned. More... | |
static void | RegisterType (const Object &defaultObject) |
OBSOLETE alternate name for registerType(). More... | |
static void | RenameType (const std::string &oldName, const std::string &newName) |
OBSOLETE alternate name for renameType(). More... | |
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static const std::string | DEFAULT_NAME |
Name used for default objects when they are serialized. More... | |
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double | _muscleWidth |
The assumed fixed muscle-width from which the fiber pennation angle can be calculated. More... | |
double | _maxIsometricForce |
to support deprecated muscles More... | |
double | _optimalFiberLength |
double | _pennationAngleAtOptimal |
double | _tendonSlackLength |
CacheVariable< Muscle::MuscleLengthInfo > | _lengthInfoCV |
CacheVariable< Muscle::FiberVelocityInfo > | _velInfoCV |
CacheVariable< Muscle::MuscleDynamicsInfo > | _dynamicsInfoCV |
CacheVariable< Muscle::MusclePotentialEnergyInfo > | _potentialEnergyInfoCV |
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int | _controlIndex |
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SimTK::ResetOnCopy< SimTK::ForceIndex > | _index |
ID for the force in Simbody. More... | |
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SimTK::ReferencePtr< Model > | _model |
The model this component belongs to. More... | |
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PropertySet | _propertySet |
OBSOLETE: Property_Deprecated set for serializable member variables of this and derived classes. More... | |
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static const std::string | STATE_ACTIVATION_NAME |
static const ComponentPath | STATE_ACTIVATION_PATH |
static const std::string | STATE_FIBER_LENGTH_NAME |
static const ComponentPath | STATE_FIBER_LENGTH_PATH |
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static const SimTK::Vec3 | InvalidScaleFactors |
Returned by getScaleFactors() if the ScaleSet does not contain scale factors for the base Body associated with the specified Frame. More... | |
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#define | OpenSim_DECLARE_CONCRETE_OBJECT(ConcreteClass, SuperClass) |
Macro to be included as the first line of the class declaration for any non-templatized, concrete class that derives from OpenSim::Object. More... | |
#define | OpenSim_DECLARE_ABSTRACT_OBJECT(ConcreteClass, SuperClass) |
Macro to be included as the first line of the class declaration for any still-abstract class that derives from OpenSim::Object. More... | |
#define | OpenSim_DECLARE_CONCRETE_OBJECT_T(ConcreteClass, TArg, SuperClass) |
Macro to be included as the first line of the class declaration for any templatized, concrete class that derives from OpenSim::Object, like Set<T>. More... | |
#define | OpenSim_DECLARE_ABSTRACT_OBJECT_T(ConcreteClass, TArg, SuperClass) |
Macro to be included as the first line of the class declaration for any templatized, still-abstract class that derives from OpenSim::Object. More... | |
Implementation of a two state (activation and fiber-length) Muscle model by Thelen 2003. This a complete rewrite of a previous implementation (present in OpenSim 2.4 and earlier) contained numerous errors.
The Thelen2003Muscle model uses a standard equilibrium muscle equation
(a(t) f_{AL}(l_{CE}) f_{V}(\dot{l}_{CE}) - f_{PE}(l_{CE}))\cos \phi - f_{SE}(l_{T}) = 0
Rearranging the above equation and solving for f_{V}(\dot{l}_{CE}) yields
f_{V}(\dot{l}_{CE}) = \frac{ \frac{f_{SE}(l_{T})}{\cos\phi} - f_{PE}(l_{CE}) }{ a(t) f_{AL}(l_{CE}) }
The force velocity curve is usually inverted to compute the fiber velocity,
\dot{l}_{CE} = f_{V}^{-1}( \frac{ \frac{f_{SE}(l_{T})}{\cos\phi} - f_{PE}(l_{CE}) }{ a(t) f_{AL}(l_{CE}) } )
which is then integrated to simulate the musculotendon dynamics. In general, the previous equation has 4 singularity conditions:
This implementation has been slightly modified from the model presented in the journal paper (marked with a *) to prevent some of these singularities:
* f_{V}(\dot{l}_{CE}) \le 0 or f_{V}(\dot{l}_{CE}) \ge F^M_{len}: Equation 6 in Thelen 2003 has been modified so that V^M is linearly extrapolated when F^M < 0 (during a concentric contraction), and when F^M > 0.95 F^M_{len} (during an eccentric contraction). These two modifications make the force velocity curve invertible. The original force velocity curve as published by Thelen was not invertible.
-# A unilateral constraint has been implemented to prevent the fiber from approaching a fiber length that is smaller than 0.01*optimal fiber length, or a fiber length that creates a pennation angle greater than the maximum pennation angle specified by the pennation model. Note that this unilateral constraint does not prevent the muscle fiber from becoming shorter than is physiologically possible (that is shorter than approximately half a normalized fiber length).
References
DG Thelen, Adjustment of muscle mechanics model parameters to simulate dynamic contractions in older adults. Journal of biomechanical engineering, 2003.
This typedef might be useful within the member functions of this class.
This is generated by the OpenSim_DECLARE_*_OBJECT
macros.
Use this typedef to refer to the superclass of this class.
Avoid using the explicit type name of the superclass; this would introduce bugs if the superclass is changed.
This is generated by the OpenSim_DECLARE_*_OBJECT
macros.
OpenSim::Thelen2003Muscle::Thelen2003Muscle | ( | ) |
OpenSim::Thelen2003Muscle::Thelen2003Muscle | ( | const std::string & | aName, |
double | aMaxIsometricForce, | ||
double | aOptimalFiberLength, | ||
double | aTendonSlackLength, | ||
double | aPennationAngle | ||
) |
|
inlineoverride |
This allows copy assignment in the Java GUI.
Exception | if the argument is not of type Thelen2003Muscle. |
|
overrideprotectedvirtual |
Calculate activation rate.
Implements OpenSim::ActivationFiberLengthMuscle.
|
overrideprotectedvirtual |
calculate muscle's velocity related values such fiber and tendon velocities,normalized velocities, pennation angular velocity, etc...
Reimplemented from OpenSim::Muscle.
|
overrideprotectedvirtual |
calculate muscle's active and passive force-length, force-velocity, tendon force, relationships and their related values
Reimplemented from OpenSim::Muscle.
|
overrideprotectedvirtual |
calculate muscle's position related values such fiber and tendon lengths, normalized lengths, pennation angle, etc...
Reimplemented from OpenSim::Muscle.
|
overrideprotectedvirtual |
calculate muscle's fiber and tendon potential energy
Reimplemented from OpenSim::Muscle.
|
inlineoverridevirtual |
Create a new heap-allocated copy of the concrete object to which this Object refers.
It is up to the caller to delete the returned object when no longer needed. Every concrete object deriving from Object implements this pure virtual method automatically, via the declaration macro it invokes (e.g., OpenSim_DECLARE_CONCRETE_OBJECT()). Note that the concrete class overrides modify the return type to be a pointer to the concrete object; that still overrides the base class method because the return type is covariant with (that is, derives from) Object.
Implements OpenSim::ActivationFiberLengthMuscle.
|
overridevirtual |
Actuator interface for a muscle computes the tension in the muscle and applied by the tendon to bones (i.e.
not the fiber force)
Implements OpenSim::Muscle.
|
overridevirtual |
Compute initial fiber length (velocity) such that muscle fiber and tendon are in static equilibrium and update the state.
Part of the Muscle.h interface
MuscleCannotEquilibrate |
Implements OpenSim::Muscle.
|
overrideprotectedvirtual |
Implement the ModelComponent interface.
Reimplemented from OpenSim::ModelComponent.
|
overrideprotected |
Component interface.
|
overrideprotected |
|
overrideprotected |
|
inline |
Get the value of the activation_time_constant property.
|
inline |
Get the value of the Af property.
|
inline |
Get the value of the deactivation_time_constant property.
|
inline |
Get the value of the Flen property.
|
inline |
Get the value of the FmaxMuscleStrain property.
|
inline |
Get the value of the FmaxTendonStrain property.
|
inline |
Get the value of the fv_linear_extrap_threshold property.
|
inline |
Get the value of the KshapeActive property.
|
inline |
Get the value of the KshapePassive property.
|
inline |
Get the value of the maximum_pennation_angle property.
|
inline |
Get the value of the minimum_activation property.
const MuscleFirstOrderActivationDynamicModel& OpenSim::Thelen2003Muscle::getActivationModel | ( | ) | const |
double OpenSim::Thelen2003Muscle::getActivationTimeConstant | ( | ) | const |
|
inlinestatic |
This returns "Thelen2003Muscle".
See getConcreteClassName() if you want the class name of the underlying concrete object instead.
This is generated by the OpenSim_DECLARE_*_OBJECT
macros.
|
inlineoverridevirtual |
Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string.
This is the string that is used as the tag for this concrete object in an XML file. Every concrete class derived from Object automatically overrides this method via the declaration macro it uses. See getClassName() to get the class name of the referencing (possibly abstract) class rather than the concrete object.
Implements OpenSim::ActivationFiberLengthMuscle.
double OpenSim::Thelen2003Muscle::getDeactivationTimeConstant | ( | ) | const |
double OpenSim::Thelen2003Muscle::getMaximumPennationAngle | ( | ) | const |
double OpenSim::Thelen2003Muscle::getMinimumActivation | ( | ) | const |
double OpenSim::Thelen2003Muscle::getMinimumFiberLength | ( | ) | const |
const MuscleFixedWidthPennationModel& OpenSim::Thelen2003Muscle::getPennationModel | ( | ) | const |
void OpenSim::Thelen2003Muscle::printCurveToCSVFile | ( | const CurveType | ctype, |
const std::string & | path | ||
) | const |
|
inlinestatic |
For use in MATLAB and Python to access the concrete class.
Example: cObj = Thelen2003Muscle.safeDownCast(obj)
. This is equivalent to dynamic_cast<Thelen2003Muscle*>(obj)
in C++.
|
inline |
Set the value of the activation_time_constant property.
|
inline |
Set the value of the Af property.
|
inline |
Set the value of the deactivation_time_constant property.
|
inline |
Set the value of the Flen property.
|
inline |
Set the value of the FmaxMuscleStrain property.
|
inline |
Set the value of the FmaxTendonStrain property.
|
inline |
Set the value of the fv_linear_extrap_threshold property.
|
inline |
Set the value of the KshapeActive property.
|
inline |
Set the value of the KshapePassive property.
|
inline |
Set the value of the maximum_pennation_angle property.
|
inline |
Set the value of the minimum_activation property.
void OpenSim::Thelen2003Muscle::setActivationTimeConstant | ( | double | actTimeConstant | ) |
void OpenSim::Thelen2003Muscle::setDeactivationTimeConstant | ( | double | deactTimeConstant | ) |
void OpenSim::Thelen2003Muscle::setMaximumPennationAngle | ( | double | maximumPennationAngle | ) |
void OpenSim::Thelen2003Muscle::setMinimumActivation | ( | double | minimumActivation | ) |
|
inline |
Get a writable reference to the activation_time_constant property.
|
inline |
Get a writable reference to the Af property.
|
inline |
Get a writable reference to the deactivation_time_constant property.
|
inline |
Get a writable reference to the Flen property.
|
inline |
Get a writable reference to the FmaxMuscleStrain property.
|
inline |
Get a writable reference to the FmaxTendonStrain property.
|
inline |
Get a writable reference to the fv_linear_extrap_threshold property.
|
inline |
Get a writable reference to the KshapeActive property.
|
inline |
Get a writable reference to the KshapePassive property.
|
inline |
Get a writable reference to the maximum_pennation_angle property.
|
inline |
Get a writable reference to the minimum_activation property.
double OpenSim::Thelen2003Muscle::activation_time_constant |
"Activation time constant, in seconds"
This property appears in XML files under the tag <activation_time_constant>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::Af |
"force-velocity shape factor"
This property appears in XML files under the tag <Af>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::deactivation_time_constant |
"Deactivation time constant, in seconds"
This property appears in XML files under the tag <deactivation_time_constant>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::Flen |
"maximum normalized lengthening force"
This property appears in XML files under the tag <Flen>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::FmaxMuscleStrain |
"passive muscle strain at maximum isometric muscle force"
This property appears in XML files under the tag <FmaxMuscleStrain>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::FmaxTendonStrain |
"tendon strain at maximum isometric muscle force"
This property appears in XML files under the tag <FmaxTendonStrain>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::fv_linear_extrap_threshold |
"fv threshold where linear extrapolation is used"
This property appears in XML files under the tag <fv_linear_extrap_threshold>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::KshapeActive |
"shape factor for Gaussian active muscle force-length relationship"
This property appears in XML files under the tag <KshapeActive>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::KshapePassive |
"exponential shape factor for passive force-length relationship"
This property appears in XML files under the tag <KshapePassive>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::maximum_pennation_angle |
"Maximum pennation angle, in radians"
This property appears in XML files under the tag <maximum_pennation_angle>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.
double OpenSim::Thelen2003Muscle::minimum_activation |
"Lower bound on activation"
This property appears in XML files under the tag <minimum_activation>. This property was generated with the OpenSim_DECLARE_PROPERTY macro; see Property to learn about the property system.