Protein Class Reference

#include <Protein.h>

Inheritance diagram for Protein:

List of all members.

Public Member Functions
void	loadFromPdbStructure (const PdbStructure &pdbStructure, SimTK::Real targetRms)
void	loadFromPdbChain (const PdbChain &pdbChain, SimTK::Real targetRms)
	Protein (std::istream &pdbStream, SimTK::Real targetRms=0.02)
	Protein (const PdbStructure &pdbStructure, SimTK::Real targetRms=0.02)
	Protein (const PdbChain &pdbChain, SimTK::Real targetRms)
	Protein (const Sequence &seq, const BondMobility::Mobility mobility=BondMobility::Rigid, bool addEndCaps=true)
	Protein (const Sequence &seq, CompoundSystem &system, Transform transform=Transform())
Protected Member Functions
void	initialize (const Sequence &seq, const BondMobility::Mobility mobility, bool addEndCaps=true)

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Constructor & Destructor Documentation

Protein	(	std::istream &	pdbStream,
		SimTK::Real	targetRms = 0.02
	)			[inline, explicit]

Protein	(	const PdbStructure &	pdbStructure,
		SimTK::Real	targetRms = 0.02
	)			[inline, explicit]

Protein	(	const PdbChain &	pdbChain,
		SimTK::Real	targetRms
	)			[inline, explicit]

Protein	(	const Sequence &	seq,
		const BondMobility::Mobility	mobility = BondMobility::Rigid,
		bool	addEndCaps = true
	)			[inline, explicit]

Protein	(	const Sequence &	seq,
		CompoundSystem &	system,
		Transform	transform = Transform()
	)			[inline, explicit]

References CompoundSystem::adoptCompound(), and SimTK::BondMobility::Rigid.

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Member Function Documentation

void initialize	(	const Sequence &	seq,
		const BondMobility::Mobility	mobility,
		bool	addEndCaps = true
	)			[inline, protected]

References BiopolymerResidue::assignBiotypes(), AminoAcidResidue::create(), Biotype::initializePopularBiotypes(), SimTK::BondMobility::Rigid, Compound::setPdbResidueNumber(), and String::size().

void loadFromPdbChain	(	const PdbChain &	pdbChain,
		SimTK::Real	targetRms
	)

void loadFromPdbStructure	(	const PdbStructure &	pdbStructure,
		SimTK::Real	targetRms
	)			[inline]

References PdbModel::getChain(), and PdbStructure::getModel().

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The documentation for this class was generated from the following file:

• Protein.h