Predicting allosteric communication in myosin via a conserved residue pathway
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AlloPathFinder
The application Allopathfinder facilitates the computation of the "best paths" between two locations in a protein 'structure'. Please download the AlloPathFinderUsersGuide.pdf first to learn about the application. For instructions on how to reproduce the paths for the structures in Figure 3 of our publication please download the file RunningAlloPathFinder.txt under 'Documentation Links' below.
Release 1.1
May 07, 2007

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PLEASE CITE THESE PAPERS

Tang S, Liao JC, Dunn A, Spudich JA, Altman RB, Schmidt J. "Predicting allosteric communication in myosin via a pathway of conserved residues." Journal of Molecular Biology, 373, 1361–1373. (2007) View

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AlloPathFinderExampleData
This package contains additional PDB files that can be used as examples for running the AlloPathFinder software. Consult RunningAlloPathFinder.txt in the AlloPathFinder Package on how to use these in conjunction with the MyosinMSA_158.aln multiple alignment file to reproduce the paths reported in Figure 3 of JMB 373,1361–1373.
data v.1
Mar 14, 2007

  

Download Package

PLEASE CITE THESE PAPERS

Tang S, Liao JC, Dunn A, Spudich JA, Altman RB, Schmidt J. Predicting allosteric communication in myosin via a pathway of conserved residues. Journal of Molecular Biology, 373, 1361–1373 (2007) View


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