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THIS DOWNLOAD REPOSITORY IS OBSOLETE! Please get the latest code from github: https://github.com/samuelflores/molmodel.git This page provides binary and source releases of Molmodel, starting with version 2.2. (Earlier releases were packaged as part of the SimTKcore project.) IMPORTANT NOTE: You must install Simbody first before installing or building Molmodel. If you want to use OpenMM acceleration then you should also install OpenMM prior to Molmodel. Need help? Use the help forum: Advanced -> Public
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Molmodel
These are the release packages for Molmodel, starting with release 2.2. (Earlier releases were packaged in the SimTKcore project.) Pre-built binaries are provided for a variety of Windows, Mac, and Linux platforms. A single source release is supplied that can be used to build for any platform. NOTE: You must install a compatible version of Simbody first before installing Molmodel.
Molmodel 2.2
Jun 15, 2011

This is release 2.2 of Molmodel, built from the Molmodel2.2-Source.zip distribution (below). Please download, test, and report problems and successes to the Molmodel forum under Advanced->Public Forums.  

Download Links

Linux 64-bit binaries

Jun 14, 2011
23 MB
Linux
Application/binary
Primary 64-bit Linux package built using gcc 4.4.4; be sure to use the matching Simbody2.2 package.

Jun 14, 2011
24 MB
Linux
Application/binary
Alternate 64-bit Linux binaries built with gcc 4.4.5; be sure to use matching Simbody2.2 package.

Linux 32-bit binaries

Jun 15, 2011
22 MB
Linux
Application/binary
Primary 32-bit Linux package compiled with gcc 4.1.2; be sure to use the matching Simbody2.2 package.

Jun 14, 2011
23 MB
Linux
Application/binary
Alternate 32-bit Linux package build with gcc 4.4.3; be sure to use matching Simbody2.2 package.

Mac binary (32 bit)

Jun 14, 2011
19 MB
Mac OS X
Application/binary
Mac 32-bit binary (not universal). It was built using the OSX 10.5 (Leopard) SDK with gcc 4.2.1. Works on Snow Leopard too.

Windows binaries (32 bit)

Jun 14, 2011
21 MB
Windows
Application/binary
Windows 32-bit binary compiled with Visual Studio 10 Professional (2010)

Jun 14, 2011
20 MB
Windows
Application/binary
Windows 32-bit binary compiled with Visual Studio 9 Professional (2008)

Source code

Jun 14, 2011
10 MB
Any
Source code
Molmodel 2.2 source code distribution, exported from Subversion branches/Molmodel2.2. See Simbody Documents page for instructions.

Documentation Links

Jun 15, 2011
Provides background, installation instructions, and tutorials. See the Documents page for more.

PLEASE CITE THESE PAPERS

Schmidt, J.P.; Delp, S.L.; Sherman, M.A.; Taylor, C.A.; Pande, V.S.; Altman, R.B. "The Simbios National Center: Systems Biology in Motion" Proceedings of the IEEE 96(8):1266-1280 (2008) View

ADDITIONAL PAPERS

Flores, S.C.; Sherman, M.A.; Bruns, C.M.; Eastman, P.; Altman, R.B. "Fast flexible modeling of RNA structure using internal coordinates" IEEE/ACM Transactions on Computational Biology and Bioinformatics 99 (2010) View


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