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Bio-Mapper tools
BIO_Mapper matlab tools for analyzing RNA hairpin folding pathways
Bio Mapper v1
Dec 17, 2008

  

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Dec 17, 2008
5 KB
Any
Source code
Matlab code for Mapper

Documentation Links

Dec 19, 2008
README file

PLEASE CITE THESE PAPERS

Topological Methods for Exploring Low-density States in Biomolecular Folding Pathways. Yuan Yao, Jian Sun, Xuhui Huang, Gregory Bowman, Gurjeet Singh, Michael Lesnick, Vijay Pande, Leonidas Guibas and Gunnar Carlsson. J. Chem. Phys. 130, 144115 (2009) View


Reproduce RNA-Mapper paper
This package can be used to reproduce the results of the following article, Topological Methods for Exploring Low-density States in Biomolecular Folding Pathways. Yuan Yao, Jian Sun, Xuhui Huang, Gregory Bowman, Gurjeet Singh, Michael Lesnick, Vijay Pande, Leonidas Guibas and Gunnar Carlsson. J. Chem. Phys. 130, 144115 (2009) This program is running in MATLAB 7.4 (R2007a) or above, and has following two additional requirements: 1) Matlab toolbox MatlabBGL (free): http://www.mathworks.com/matlabcentral/fileexchange/10922 2) Graphviz (free): http://www.graphviz.org/
Reproduce Fig. 3
Dec 17, 2008

Notes  

Download Links

Dec 19, 2008
479 KB
Any
Source code
Reproduce Figure 3

Dec 19, 2008
0
Any
Application/binary
Graphviz is only required if you wish to visualize the output file from bio-mapper

Dec 18, 2008
0
Any
Application/binary
This package is required to run bio-mapper scripts. Free at http://www.mathworks.com/matlabcentral/fileexchange/10922

Documentation Links

Dec 20, 2008
Readme

PLEASE CITE THESE PAPERS

Topological Methods for Exploring Low-density States in Biomolecular Folding Pathways. Yuan Yao, Jian Sun, Xuhui Huang, Gregory Bowman, Gurjeet Singh, Michael Lesnick, Vijay Pande, Leonidas Guibas and Gunnar Carlsson. J. Chem. Phys. 130, 144115 (2009) View


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