Dec 17, 2008
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Source code
Matlab code for Mapper
Bio-Mapper tools
BIO_Mapper matlab tools for analyzing RNA hairpin folding pathways
Bio Mapper v1
Dec 17, 2008
PLEASE CITE THESE PAPERS
Topological Methods for Exploring Low-density States in Biomolecular Folding Pathways. Yuan Yao, Jian Sun, Xuhui Huang, Gregory Bowman, Gurjeet Singh, Michael Lesnick, Vijay Pande, Leonidas Guibas and Gunnar Carlsson. J. Chem. Phys. 130, 144115 (2009) View
Reproduce RNA-Mapper paper
This package can be used to reproduce the results of the following article,
Topological Methods for Exploring Low-density States in Biomolecular Folding Pathways. Yuan Yao, Jian Sun, Xuhui Huang, Gregory Bowman, Gurjeet Singh, Michael Lesnick, Vijay Pande, Leonidas Guibas and Gunnar Carlsson. J. Chem. Phys. 130, 144115 (2009)
This program is running in MATLAB 7.4 (R2007a) or above, and has following two additional requirements:
1) Matlab toolbox MatlabBGL (free):
http://www.mathworks.com/matlabcentral/fileexchange/10922
2) Graphviz (free): http://www.graphviz.org/
Reproduce Fig. 3
Dec 17, 2008
PLEASE CITE THESE PAPERS
Topological Methods for Exploring Low-density States in Biomolecular Folding Pathways. Yuan Yao, Jian Sun, Xuhui Huang, Gregory Bowman, Gurjeet Singh, Michael Lesnick, Vijay Pande, Leonidas Guibas and Gunnar Carlsson. J. Chem. Phys. 130, 144115 (2009) View
