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Slides, Videos, and Handouts
Materials
Jun 19, 2009

  

Documentation Links

Slides

Jul 09, 2009
by Russ Altman / Introduction to 3D RNA modeling and molecular dynamics

Jul 09, 2009
by Samuel Flores / Sep-by-step explanations of how to use RNABuilder

Jul 08, 2009
by Magdalena Jonikas / Tutorial on how to use NAST and C2A

Jul 08, 2009
by Christopher Bruns / Series of examples on using OpenMM Zephyr. One example is on energy minimization, a follow-up to the NAST tutorial

Videos (you need Quicktime to view this video)

Jul 30, 2009
by Russ Altman / Introduction to 3D RNA modeling and molecular dynamics

Jul 30, 2009
by Samuel Flores / Step-by-step explanations of how to use RNABuilder

Sep 03, 2009
by Magdalena Jonikas / Coarse to Atomic (C2A): introduction and demo of adding full-atomic details to a coarse-grained model, e.g.,from NAST

Jul 30, 2009
by Christopher Bruns / Series of examples on using OpenMM Zephyr.

Handouts

Jul 09, 2009
Manual outlining 3 examples of using RNABuilder: specifying base pairs, rigidifying parts of a model, threading

Jul 09, 2009
Manual outlining steps to build a coarse-grained model with NAST and then generate full atomic model with C2A

Jul 09, 2009
User manual for OpenMM Zephyr. Includes tutorial on using mdrun.

Other Files

Jul 09, 2009

Jul 09, 2009


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