org.simtk.molecularstructure.nucleicacid
Class DNA

java.lang.Object
  org.simtk.molecularstructure.MolecularClass
      org.simtk.molecularstructure.MoleculeClass
          org.simtk.molecularstructure.BiopolymerClass
              org.simtk.molecularstructure.nucleicacid.NucleicAcid
                  org.simtk.molecularstructure.nucleicacid.DNA

All Implemented Interfaces:

MassBody, Biopolymer, Chemical, Molecular, Molecule

public class DNA
extends NucleicAcid

Field Summary

Fields inherited from class org.simtk.molecularstructure.MoleculeClass

chainId, displaySourceTypes

Constructor Summary

DNA(char chainId)

Method Summary

Methods inherited from class org.simtk.molecularstructure.nucleicacid.NucleicAcid

addGenericResidueBonds, computeBaseHydrogenBonds, identifyBasePairs, identifyHairpins

Methods inherited from class org.simtk.molecularstructure.BiopolymerClass

addGenericResidueBond, addSecondaryStructure, displayableStructures, getResidue, getResidueByNumber, getResidueByNumber, getResidueByNumber, residues, secondaryStructures

Methods inherited from class org.simtk.molecularstructure.MoleculeClass

createFactoryPDBMolecule, createFactoryPDBMolecule, createFactoryPDBMolecule, getDisplaySourceTypes, getPdbChainId, isSolvent, setDisplaySourceTypes, setPdbChainId

Methods inherited from class org.simtk.molecularstructure.MolecularClass

atoms, bestPlane3D, getCenterOfMass, getMass

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simtk.molecularstructure.Molecule

getDisplaySourceTypes, getPdbChainId, isSolvent, setDisplaySourceTypes

Methods inherited from interface org.simtk.molecularstructure.Molecular

atoms, bestPlane3D

Methods inherited from interface org.simtk.geometry3d.MassBody

getCenterOfMass, getMass

Constructor Detail

DNA

public DNA(char chainId)