org.simtk.molecularstructure.nucleicacid
Class Pseudoknot

java.lang.Object
  org.simtk.molecularstructure.SecondaryStructureClass
      org.simtk.molecularstructure.nucleicacid.Pseudoknot

All Implemented Interfaces:

SecondaryStructure

public class Pseudoknot
extends SecondaryStructureClass

Nested Class Summary

Nested classes/interfaces inherited from class org.simtk.molecularstructure.SecondaryStructureClass

SecondaryStructureClass.SourceType

Field Summary

Fields inherited from class org.simtk.molecularstructure.SecondaryStructureClass

parentMolecules, residues, resLimit, sourceType

Constructor Summary

Pseudoknot(Duplex dup1, Duplex dup2)

Pseudoknot(Duplex dup1, Duplex dup2, java.lang.String source)

Method Summary

Methods inherited from class org.simtk.molecularstructure.SecondaryStructureClass

addMolecule, addResidue, getMolecules, getResidueIterator, getSource, residues, setMolecule, setSource

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Pseudoknot

public Pseudoknot(Duplex dup1,
                  Duplex dup2)

Pseudoknot

public Pseudoknot(Duplex dup1,
                  Duplex dup2,
                  java.lang.String source)