Hierarchy For Package org.simtk.molecularstructure.protein

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • org.simtk.molecularstructure.MolecularClass (implements org.simtk.molecularstructure.Molecular)
    • org.simtk.molecularstructure.MoleculeClass (implements org.simtk.molecularstructure.Molecule)
      • org.simtk.molecularstructure.BiopolymerClass (implements org.simtk.molecularstructure.Biopolymer)
        • org.simtk.molecularstructure.protein.PDBProteinClass (implements org.simtk.molecularstructure.protein.Protein)
  • org.simtk.molecularstructure.ResidueTypeClass (implements org.simtk.molecularstructure.ResidueType)
    • org.simtk.molecularstructure.protein.AminoAcid
      • org.simtk.molecularstructure.protein.Alanine
      • org.simtk.molecularstructure.protein.Arginine
      • org.simtk.molecularstructure.protein.Asparagine
      • org.simtk.molecularstructure.protein.Aspartate
      • org.simtk.molecularstructure.protein.Cysteine
      • org.simtk.molecularstructure.protein.Glutamate
      • org.simtk.molecularstructure.protein.Glutamine
      • org.simtk.molecularstructure.protein.Glycine
      • org.simtk.molecularstructure.protein.Histidine
      • org.simtk.molecularstructure.protein.Isoleucine
      • org.simtk.molecularstructure.protein.Leucine
      • org.simtk.molecularstructure.protein.Lysine
      • org.simtk.molecularstructure.protein.Methionine
      • org.simtk.molecularstructure.protein.Phenylalanine
      • org.simtk.molecularstructure.protein.Proline
      • org.simtk.molecularstructure.protein.Serine
      • org.simtk.molecularstructure.protein.Threonine
      • org.simtk.molecularstructure.protein.Tryptophan
      • org.simtk.molecularstructure.protein.Tyrosine
      • org.simtk.molecularstructure.protein.UnknownAminoAcid
      • org.simtk.molecularstructure.protein.Valine
  • org.simtk.molecularstructure.SecondaryStructureClass (implements org.simtk.molecularstructure.SecondaryStructure)
    • org.simtk.molecularstructure.protein.BetaStrand
    • org.simtk.molecularstructure.protein.Helix

Interface Hierarchy

• org.simtk.molecularstructure.Chemical
  • org.simtk.molecularstructure.Molecular (also extends org.simtk.geometry3d.MassBody)
    • org.simtk.molecularstructure.Molecule
      • org.simtk.molecularstructure.Biopolymer
        • org.simtk.molecularstructure.protein.Protein
          • org.simtk.molecularstructure.protein.LocatedProtein (also extends org.simtk.molecularstructure.Molecule)
      • org.simtk.molecularstructure.protein.LocatedProtein (also extends org.simtk.molecularstructure.protein.Protein)
• org.simtk.geometry3d.MassBody
  • org.simtk.molecularstructure.Molecular (also extends org.simtk.molecularstructure.Chemical)
    • org.simtk.molecularstructure.Molecule
      • org.simtk.molecularstructure.Biopolymer
        • org.simtk.molecularstructure.protein.Protein
          • org.simtk.molecularstructure.protein.LocatedProtein (also extends org.simtk.molecularstructure.Molecule)
      • org.simtk.molecularstructure.protein.LocatedProtein (also extends org.simtk.molecularstructure.protein.Protein)