#include "SimTKmolmodel.h"
#include "SimTKsimbody_aux.h"
#include <fstream>
#include <iostream>
#include <exception>
Classes | |
class | WritePdbReporter |
Functions | |
void | integrate (Real accuracy, BondMobility::Mobility mobility, int integratorIndex, std::ostream &os) |
int | main () |
void integrate | ( | Real | accuracy, | |
BondMobility::Mobility | mobility, | |||
int | integratorIndex, | |||
std::ostream & | os | |||
) |
References WritePdbReporter::addCompound(), CompoundSystem::adoptCompound(), Biopolymer::assignBiotypes(), b, SimTK::BondMobility::Free, DuMMForceFieldSubsystem::getForceEvaluationCount(), Integrator::getMethodName(), Compound::getNBonds(), Integrator::getPreviousStepSizeTaken(), TimeStepper::getTime(), TimeStepper::initialize(), DuMMForceFieldSubsystem::loadAmber99Parameters(), CompoundSystem::modelCompounds(), SimTK::BondMobility::Rigid, Integrator::setAccuracy(), Compound::setBondMobility(), Compound::setPdbChainId(), TimeStepper::setReportAllSignificantStates(), Integrator::setReturnEveryInternalStep(), SimTK::sort(), TimeStepper::stepTo(), and SimTK::BondMobility::Torsion.
Referenced by main().
int main | ( | void | ) |