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This section contains project files compatible with Netbeans 8 and Java 8 to run simulations of AILI using an agent-based In Silico Liver (ISL) model, an analog of a mouse liver.
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AILI ISL
An In Silico Liver (ISL) agent-based model, analogous to a mouse liver, to run simulations of Acetaminophen Induced Liver Injury (AILI) phenomena.
ISL v946
Nov 09, 2017

java-based ISL version 946Notes  View License

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Nov 08, 2017
9 MB
Any
Source code

Nov 09, 2017
8 KB
Any
Data/images/video
These are the parameter files used to run the Mouse ISL experiment dosed with 34% APAP.

Documentation Links

Nov 13, 2017
A table of important variables or parameters and their values that are either varied across experiments or kept constant.

Nov 08, 2017
ReadMe file for setting up and running ISL experiments using the Mouse-APAP-34 directory containing configuration or parameter files as an example experiment.

Jan 16, 2018
The explanations and values of parameters for virtual experiments on Culture Analogs with homogeneous hepatocytes sampled from the three different Mouse Liver Lobular zones.

Previous Releases


ISL v667

Aug 28, 2015

java-based ISL version 667Notes  View License

Download Links

Aug 28, 2015
8 MB
Any
Source code


AILI Data
Results and data from virtual experiments on AILI used in publications.
data
Oct 05, 2016

  View License

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Oct 05, 2016
55 MB
Any
Data/images/video
Data from virtual experiments on Mouse Analogs from which cumulative cell death values where used to match to necrosis scores from comparable wet-lab experiments.

Oct 04, 2016
24 MB
Any
Data/images/video
Data used to challenge a prevalent hypothesis for the spatial and temporal pattern of necrosis during AILI.


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