Uses of Interface
org.simtk.molecularstructure.Biopolymer

Packages that use Biopolymer

org.simtk.molecularstructure
org.simtk.molecularstructure.nucleicacid
org.simtk.molecularstructure.protein
org.simtk.rnaml

Uses of Biopolymer in org.simtk.molecularstructure

Classes in org.simtk.molecularstructure that implement Biopolymer

class

BiopolymerClass

Fields in org.simtk.molecularstructure with type parameters of type Biopolymer

protected java.util.Set<Biopolymer>

SecondaryStructureClass.parentMolecules

Methods in org.simtk.molecularstructure that return types with arguments of type Biopolymer

java.util.Collection<Biopolymer>	SecondaryStructureClass.getMolecules()
java.util.Collection<Biopolymer>	SecondaryStructure.getMolecules()

Methods in org.simtk.molecularstructure with parameters of type Biopolymer

boolean	SecondaryStructureClass.addMolecule(Biopolymer biopolymer)
boolean	SecondaryStructure.addMolecule(Biopolymer biopolymer)
void	SecondaryStructureClass.setMolecule(Biopolymer biopolymer)
void	SecondaryStructure.setMolecule(Biopolymer biopolymer)

Constructors in org.simtk.molecularstructure with parameters of type Biopolymer

SequenceAlignment(Biopolymer m1, Biopolymer m2)

Uses of Biopolymer in org.simtk.molecularstructure.nucleicacid

Classes in org.simtk.molecularstructure.nucleicacid that implement Biopolymer

class	DNA
class	NucleicAcid
class	RNA

Uses of Biopolymer in org.simtk.molecularstructure.protein

Subinterfaces of Biopolymer in org.simtk.molecularstructure.protein

interface	LocatedProtein
interface	Protein

Classes in org.simtk.molecularstructure.protein that implement Biopolymer

class

PDBProteinClass

Uses of Biopolymer in org.simtk.rnaml

Methods in org.simtk.rnaml with parameters of type Biopolymer

boolean

RnamlDocument.isRnaviewNA(Biopolymer mol)