Uses of Interface
org.simtk.molecularstructure.Molecule

Packages that use Molecule

org.simtk.molecularstructure
org.simtk.molecularstructure.nucleicacid
org.simtk.molecularstructure.protein

Uses of Molecule in org.simtk.molecularstructure

Subinterfaces of Molecule in org.simtk.molecularstructure

interface

Biopolymer

Classes in org.simtk.molecularstructure that implement Molecule

class	BiopolymerClass
class	MoleculeClass

Methods in org.simtk.molecularstructure that return Molecule

static Molecule	MoleculeClass.createFactoryPDBMolecule(java.io.LineNumberReader reader) Read one molecule from a PDB format stream.
static Molecule	MoleculeClass.createFactoryPDBMolecule(java.lang.String fileName)
static Molecule	MoleculeClass.createFactoryPDBMolecule(java.net.URL url)
Molecule	MoleculeCollection.getMolecule(int i)

Methods in org.simtk.molecularstructure that return types with arguments of type Molecule

java.util.Collection<Molecule>

MoleculeCollection.molecules()

Uses of Molecule in org.simtk.molecularstructure.nucleicacid

Classes in org.simtk.molecularstructure.nucleicacid that implement Molecule

class	DNA
class	NucleicAcid
class	RNA

Uses of Molecule in org.simtk.molecularstructure.protein

Subinterfaces of Molecule in org.simtk.molecularstructure.protein

interface	LocatedProtein
interface	Protein

Classes in org.simtk.molecularstructure.protein that implement Molecule

class

PDBProteinClass