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Splitting probabilities as a test of reaction coordinate choice in single-molecule experiments (2009)

Provide Matlab tools for determining whether an observed order parameter is a good reaction coordinate, given trajectory data


This project provides the Matlab analysis tools for analyzing trajectory data collected from single-molecule experiments or biomolecular simulations to determine whether the observed coordinate is also a good reaction coordinate. Splitting probabilities are computed at various points along the reaction coordinate and compared to the splitting probabilities predicted from a diffusive model on the empirically observed potential of mean force, as described in the paper. Datasets and model systems described in the paper are also provided.

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This software contains Matlab code for performing the splitting probability reaction coordinate analysis described in the paper. Datasets and model systems appearing in the paper are provided as well.

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